Start: 2018-09-12 22:32:06 UTC [wheezy] Package: libbiococoa2 Source: biococoa (2.2.2-1) Version: 2.2.2-1+b2 Installed-Size: 526 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: gnustep-base-runtime (>= 1.22.1), libc6 (>= 2.3.4), libgnustep-base1.22 (>= 1.22.1), libobjc4 (>= 4.2.1), gnustep-fslayout-fhs Description: Bioinformatics framework for GNUstep and Cocoa (library files) Homepage: http://bioinformatics.org/biococoa/ Description-md5: 47504dce77c3c51f2bbf44340f794f01 Tag: role::shared-lib Section: libs Priority: optional Filename: pool/main/b/biococoa/libbiococoa2_2.2.2-1+b2_amd64.deb Size: 157546 MD5sum: 7a7ee68020525eb548bbc158320a5741 SHA1: e67dd7c6bb749934519a604badd7155104477c93 SHA256: 087b0dd3a72ca726c5f4fb58d889b04636fdd803f0f62bf5da015ac49df29628 [wheezy-lts] Package: libbiococoa2 Source: biococoa (2.2.2-1) Version: 2.2.2-1+b2 Installed-Size: 526 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: gnustep-base-runtime (>= 1.22.1), libc6 (>= 2.3.4), libgnustep-base1.22 (>= 1.22.1), libobjc4 (>= 4.2.1), gnustep-fslayout-fhs Description: Bioinformatics framework for GNUstep and Cocoa (library files) Homepage: http://bioinformatics.org/biococoa/ Description-md5: 47504dce77c3c51f2bbf44340f794f01 Tag: role::shared-lib Section: libs Priority: optional Filename: pool/main/b/biococoa/libbiococoa2_2.2.2-1+b2_amd64.deb Size: 157546 MD5sum: 7a7ee68020525eb548bbc158320a5741 SHA1: e67dd7c6bb749934519a604badd7155104477c93 SHA256: 087b0dd3a72ca726c5f4fb58d889b04636fdd803f0f62bf5da015ac49df29628 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d wheezy-lts -B reference-chroot-metadata.dat --apt libbiococoa2=2.2.2-1+b2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.92~201809081242~0.91-20-gc61fc0a1 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --skip-logrotatefiles-test --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d wheezy-lts -B reference-chroot-metadata.dat --apt libbiococoa2=2.2.2-1+b2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-8-amd64 #1 SMP Debian 4.9.110-3+deb9u4 (2018-08-21) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp5SvyTB 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp5SvyTB 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m2.0s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/proc'] 0m2.0s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/proc'] 0m2.0s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/dev/pts'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/dev/pts'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/dev/ptmx'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/dev/ptmx'] 0m2.1s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/dev/console'] 0m2.1s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/dev/console'] 0m2.1s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/run/shm'] 0m2.1s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/run/shm'] 0m2.1s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main 0m2.1s DEBUG: Created policy-rc.d and chmodded it. 0m2.1s DEBUG: Created resolv.conf. 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp5SvyTB/tmp/scripts/ 0m2.1s DEBUG: Copying scriptsdir /etc/piuparts/scripts-wheezy to /srv/piuparts.debian.org/tmp/tmp5SvyTB/tmp/scripts/ 0m2.1s INFO: Running scripts post_chroot_unpack 0m2.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-get', 'update'] 0m4.5s DUMP: Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Reading package lists... 0m4.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-get', 'update'] 0m4.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-get', '-yf', 'dist-upgrade'] 0m4.8s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-get', '-yf', 'dist-upgrade'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.9s DUMP: 0c96df6df725ee7ec7aebd2b6a77fb72 - 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.9s INFO: Running scripts post_setup 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_setup_dummy_users'] 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_setup_dummy_users'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_setup_forbid_home'] 0m5.7s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_setup_forbid_home'] 0m5.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_setup_minimize'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_setup_minimize'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m6.5s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 335 kB of archives. After this operation, 1327 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 335 kB in 0s (22.3 MB/s) Selecting previously unselected package adduser. (Reading database ... 6639 files and directories currently installed.) Unpacking adduser (from .../adduser_3.113+nmu3_all.deb) ... Selecting previously unselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ... Moving old data out of the way Setting up adduser (3.113+nmu3) ... Setting up ucf (3.0025+nmu3) ... 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_setup_zz_backports'] 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_setup_zz_backports'] 0m6.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.5s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m6.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m6.5s DEBUG: Loading chroot meta data from reference-chroot-metadata.dat 0m7.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5SvyTB'] 0m7.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5SvyTB'] 0m7.6s INFO: Running scripts is_testable 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/is_testable_uninstallable'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/is_testable_uninstallable'] 0m7.6s INFO: Running scripts pre_test 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_test_exceptions'] 0m7.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_test_exceptions'] 0m7.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_test_root_password'] 0m7.7s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_test_root_password'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-cache', 'show', '--no-all-versions', 'libbiococoa2'] 0m7.7s DUMP: Package: libbiococoa2 Source: biococoa (2.2.2-1) Version: 2.2.2-1+b2 Installed-Size: 526 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: gnustep-base-runtime (>= 1.22.1), libc6 (>= 2.3.4), libgnustep-base1.22 (>= 1.22.1), libobjc4 (>= 4.2.1), gnustep-fslayout-fhs Description-en: Bioinformatics framework for GNUstep and Cocoa (library files) BioCocoa is an open source Cocoa framework for bioinformatics. It intends to provide Cocoa programmers with a full suite of tools for handling and manipulating biological sequences. Cocoa is a great framework for rapid application development and it is therefore often used to create innovative bioscientific apps. To speed up development even more, BioCocoa wants to offer reusable Cocoa classes that are specific for molecular biology and biofinformatics. At this time, BioCocoa offers model classes for biological sequences, controller classes for alignment, sequence manipulation and I/O, interfacing with ENTREZ and view classes that let you easily display and work with sequences in your own applications. . This package contains the runtime libraries. Homepage: http://bioinformatics.org/biococoa/ Description-md5: 47504dce77c3c51f2bbf44340f794f01 Tag: role::shared-lib Section: libs Priority: optional Filename: pool/main/b/biococoa/libbiococoa2_2.2.2-1+b2_amd64.deb Size: 157546 MD5sum: 7a7ee68020525eb548bbc158320a5741 SHA1: e67dd7c6bb749934519a604badd7155104477c93 SHA256: 087b0dd3a72ca726c5f4fb58d889b04636fdd803f0f62bf5da015ac49df29628 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-cache', 'show', '--no-all-versions', 'libbiococoa2'] 0m7.7s INFO: apt-cache knows about the following packages: libbiococoa2 0m7.7s INFO: Running scripts pre_install 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_database-server'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_database-server'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_exceptions'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_exceptions'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_extras'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_extras'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-cache', 'policy'] 0m7.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-cache', 'policy'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-cache', 'policy', 'libbiococoa2'] 0m7.8s DUMP: libbiococoa2: Installed: (none) Candidate: 2.2.2-1+b2 Version table: 2.2.2-1+b2 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-cache', 'policy', 'libbiococoa2'] 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-get', '-y', 'install', 'libbiococoa2'] 0m11.9s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: gnustep-base-common gnustep-base-runtime gnustep-common libavahi-client3 libavahi-common-data libavahi-common3 libclass-isa-perl libdbus-1-3 libffi5 libgcrypt11 libgdbm3 libgnustep-base1.22 libgnutls26 libgpg-error0 libicu48 libobjc4 libp11-kit0 libswitch-perl libtasn1-3 libxml2 libxslt1.1 perl perl-modules sgml-base xml-core Suggested packages: gnustep-base-doc rng-tools perl-doc libterm-readline-gnu-perl libterm-readline-perl-perl make libpod-plainer-perl sgml-base-doc debhelper Recommended packages: dbus netbase The following NEW packages will be installed: gnustep-base-common gnustep-base-runtime gnustep-common libavahi-client3 libavahi-common-data libavahi-common3 libbiococoa2 libclass-isa-perl libdbus-1-3 libffi5 libgcrypt11 libgdbm3 libgnustep-base1.22 libgnutls26 libgpg-error0 libicu48 libobjc4 libp11-kit0 libswitch-perl libtasn1-3 libxml2 libxslt1.1 perl perl-modules sgml-base xml-core 0 upgraded, 26 newly installed, 0 to remove and 0 not upgraded. Need to get 17.9 MB of archives. After this operation, 69.3 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main libgdbm3 amd64 1.8.3-11 [46.9 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main libgpg-error0 amd64 1.10-3.1 [77.9 kB] Get:3 http://mirror-ubc.debian.org/debian/ wheezy/main libgcrypt11 amd64 1.5.0-5+deb7u4 [301 kB] Get:4 http://mirror-ubc.debian.org/debian/ wheezy/main libp11-kit0 amd64 0.12-3 [52.8 kB] Get:5 http://mirror-ubc.debian.org/debian/ wheezy/main libtasn1-3 amd64 2.13-2+deb7u2 [67.8 kB] Get:6 http://mirror-ubc.debian.org/debian/ wheezy/main libgnutls26 amd64 2.12.20-8+deb7u5 [620 kB] Get:7 http://mirror-ubc.debian.org/debian/ wheezy/main libxml2 amd64 2.8.0+dfsg1-7+wheezy5 [906 kB] Get:8 http://mirror-ubc.debian.org/debian/ wheezy/main libavahi-common-data amd64 0.6.31-2 [135 kB] Get:9 http://mirror-ubc.debian.org/debian/ wheezy/main libavahi-common3 amd64 0.6.31-2 [54.6 kB] Get:10 http://mirror-ubc.debian.org/debian/ wheezy/main libdbus-1-3 amd64 1.6.8-1+deb7u6 [174 kB] Get:11 http://mirror-ubc.debian.org/debian/ wheezy/main libavahi-client3 amd64 0.6.31-2 [59.5 kB] Get:12 http://mirror-ubc.debian.org/debian/ wheezy/main libffi5 amd64 3.0.10-3 [24.8 kB] Get:13 http://mirror-ubc.debian.org/debian/ wheezy/main libicu48 amd64 4.8.1.1-12+deb7u3 [4761 kB] Get:14 http://mirror-ubc.debian.org/debian/ wheezy/main libobjc4 amd64 4.7.2-5 [158 kB] Get:15 http://mirror-ubc.debian.org/debian/ wheezy/main libxslt1.1 amd64 1.1.26-14.1 [254 kB] Get:16 http://mirror-ubc.debian.org/debian/ wheezy/main libswitch-perl all 2.16-2 [21.0 kB] Get:17 http://mirror-ubc.debian.org/debian/ wheezy/main libclass-isa-perl all 0.36-3 [12.3 kB] Get:18 http://mirror-ubc.debian.org/debian/ wheezy/main perl-modules all 5.14.2-21+deb7u3 [3444 kB] Get:19 http://mirror-ubc.debian.org/debian/ wheezy/main perl amd64 5.14.2-21+deb7u3 [4429 kB] Get:20 http://mirror-ubc.debian.org/debian/ wheezy/main sgml-base all 1.26+nmu4 [14.6 kB] Get:21 http://mirror-ubc.debian.org/debian/ wheezy/main gnustep-common amd64 2.6.2-2 [120 kB] Get:22 http://mirror-ubc.debian.org/debian/ wheezy/main xml-core all 0.13+nmu2 [24.2 kB] Get:23 http://mirror-ubc.debian.org/debian/ wheezy/main gnustep-base-common all 1.22.1-4+deb7u1 [205 kB] Get:24 http://mirror-ubc.debian.org/debian/ wheezy/main libgnustep-base1.22 amd64 1.22.1-4+deb7u1 [1539 kB] Get:25 http://mirror-ubc.debian.org/debian/ wheezy/main gnustep-base-runtime amd64 1.22.1-4+deb7u1 [231 kB] Get:26 http://mirror-ubc.debian.org/debian/ wheezy/main libbiococoa2 amd64 2.2.2-1+b2 [158 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 17.9 MB in 0s (21.8 MB/s) Selecting previously unselected package libgdbm3:amd64. (Reading database ... 6768 files and directories currently installed.) Unpacking libgdbm3:amd64 (from .../libgdbm3_1.8.3-11_amd64.deb) ... Selecting previously unselected package libgpg-error0:amd64. Unpacking libgpg-error0:amd64 (from .../libgpg-error0_1.10-3.1_amd64.deb) ... Selecting previously unselected package libgcrypt11:amd64. Unpacking libgcrypt11:amd64 (from .../libgcrypt11_1.5.0-5+deb7u4_amd64.deb) ... Selecting previously unselected package libp11-kit0:amd64. Unpacking libp11-kit0:amd64 (from .../libp11-kit0_0.12-3_amd64.deb) ... Selecting previously unselected package libtasn1-3:amd64. Unpacking libtasn1-3:amd64 (from .../libtasn1-3_2.13-2+deb7u2_amd64.deb) ... Selecting previously unselected package libgnutls26:amd64. Unpacking libgnutls26:amd64 (from .../libgnutls26_2.12.20-8+deb7u5_amd64.deb) ... Selecting previously unselected package libxml2:amd64. Unpacking libxml2:amd64 (from .../libxml2_2.8.0+dfsg1-7+wheezy5_amd64.deb) ... Selecting previously unselected package libavahi-common-data:amd64. Unpacking libavahi-common-data:amd64 (from .../libavahi-common-data_0.6.31-2_amd64.deb) ... Selecting previously unselected package libavahi-common3:amd64. Unpacking libavahi-common3:amd64 (from .../libavahi-common3_0.6.31-2_amd64.deb) ... Selecting previously unselected package libdbus-1-3:amd64. Unpacking libdbus-1-3:amd64 (from .../libdbus-1-3_1.6.8-1+deb7u6_amd64.deb) ... Selecting previously unselected package libavahi-client3:amd64. Unpacking libavahi-client3:amd64 (from .../libavahi-client3_0.6.31-2_amd64.deb) ... Selecting previously unselected package libffi5:amd64. Unpacking libffi5:amd64 (from .../libffi5_3.0.10-3_amd64.deb) ... Selecting previously unselected package libicu48:amd64. Unpacking libicu48:amd64 (from .../libicu48_4.8.1.1-12+deb7u3_amd64.deb) ... Selecting previously unselected package libobjc4:amd64. Unpacking libobjc4:amd64 (from .../libobjc4_4.7.2-5_amd64.deb) ... Selecting previously unselected package libxslt1.1:amd64. Unpacking libxslt1.1:amd64 (from .../libxslt1.1_1.1.26-14.1_amd64.deb) ... Selecting previously unselected package libswitch-perl. Unpacking libswitch-perl (from .../libswitch-perl_2.16-2_all.deb) ... Selecting previously unselected package libclass-isa-perl. Unpacking libclass-isa-perl (from .../libclass-isa-perl_0.36-3_all.deb) ... Selecting previously unselected package perl-modules. Unpacking perl-modules (from .../perl-modules_5.14.2-21+deb7u3_all.deb) ... Selecting previously unselected package perl. Unpacking perl (from .../perl_5.14.2-21+deb7u3_amd64.deb) ... Selecting previously unselected package sgml-base. Unpacking sgml-base (from .../sgml-base_1.26+nmu4_all.deb) ... Selecting previously unselected package gnustep-common. Unpacking gnustep-common (from .../gnustep-common_2.6.2-2_amd64.deb) ... Selecting previously unselected package xml-core. Unpacking xml-core (from .../xml-core_0.13+nmu2_all.deb) ... Selecting previously unselected package gnustep-base-common. Unpacking gnustep-base-common (from .../gnustep-base-common_1.22.1-4+deb7u1_all.deb) ... Selecting previously unselected package libgnustep-base1.22. Unpacking libgnustep-base1.22 (from .../libgnustep-base1.22_1.22.1-4+deb7u1_amd64.deb) ... Selecting previously unselected package gnustep-base-runtime. Unpacking gnustep-base-runtime (from .../gnustep-base-runtime_1.22.1-4+deb7u1_amd64.deb) ... Selecting previously unselected package libbiococoa2. Unpacking libbiococoa2 (from .../libbiococoa2_2.2.2-1+b2_amd64.deb) ... Setting up libgdbm3:amd64 (1.8.3-11) ... Setting up libgpg-error0:amd64 (1.10-3.1) ... Setting up libgcrypt11:amd64 (1.5.0-5+deb7u4) ... Setting up libp11-kit0:amd64 (0.12-3) ... Setting up libtasn1-3:amd64 (2.13-2+deb7u2) ... Setting up libgnutls26:amd64 (2.12.20-8+deb7u5) ... Setting up libxml2:amd64 (2.8.0+dfsg1-7+wheezy5) ... Setting up libavahi-common-data:amd64 (0.6.31-2) ... Setting up libavahi-common3:amd64 (0.6.31-2) ... Setting up libdbus-1-3:amd64 (1.6.8-1+deb7u6) ... Setting up libavahi-client3:amd64 (0.6.31-2) ... Setting up libffi5:amd64 (3.0.10-3) ... Setting up libicu48:amd64 (4.8.1.1-12+deb7u3) ... Setting up libobjc4:amd64 (4.7.2-5) ... Setting up libxslt1.1:amd64 (1.1.26-14.1) ... Setting up libclass-isa-perl (0.36-3) ... Setting up gnustep-common (2.6.2-2) ... Setting up perl-modules (5.14.2-21+deb7u3) ... Setting up perl (5.14.2-21+deb7u3) ... update-alternatives: using /usr/bin/prename to provide /usr/bin/rename (rename) in auto mode Setting up sgml-base (1.26+nmu4) ... Setting up xml-core (0.13+nmu2) ... Setting up libswitch-perl (2.16-2) ... Processing triggers for sgml-base ... Setting up gnustep-base-common (1.22.1-4+deb7u1) ... Setting up libgnustep-base1.22 (1.22.1-4+deb7u1) ... Setting up gnustep-base-runtime (1.22.1-4+deb7u1) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libbiococoa2 (2.2.2-1+b2) ... 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-get', '-y', 'install', 'libbiococoa2'] 0m11.9s INFO: Running scripts post_install 0m11.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_install_exceptions'] 0m11.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_install_exceptions'] 0m11.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5SvyTB'] 0m12.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5SvyTB'] 0m12.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp5SvyTB to wheezy-lts 0m12.6s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main deb http://security.debian.org wheezy/updates main 0m12.6s INFO: Running scripts pre_distupgrade 0m12.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_distupgrade_exceptions'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_distupgrade_exceptions'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_distupgrade_wheezy'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_distupgrade_wheezy'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m12.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m12.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-get', 'update'] 0m14.9s DUMP: Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Get:1 http://security.debian.org wheezy/updates Release.gpg [1601 B] Get:2 http://security.debian.org wheezy/updates Release [52.3 kB] Get:3 http://security.debian.org wheezy/updates/main amd64 Packages [589 kB] Get:4 http://security.debian.org wheezy/updates/main Translation-en [338 kB] Fetched 981 kB in 1s (911 kB/s) Reading package lists... 0m14.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-get', 'update'] 0m14.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-get', '-yf', 'dist-upgrade'] 0m21.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: bash gnupg gpgv libc-bin libc6 libdb5.1 libffi5 libgcrypt11 libicu48 libtasn1-3 libxml2 libxslt1.1 login multiarch-support passwd perl perl-base perl-modules sensible-utils tar tzdata 21 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 29.4 MB of archives. After this operation, 1564 kB of additional disk space will be used. Get:1 http://security.debian.org/ wheezy/updates/main bash amd64 4.2+dfsg-0.1+deb7u4 [1499 kB] Get:2 http://security.debian.org/ wheezy/updates/main login amd64 1:4.1.5.1-1+deb7u1 [984 kB] Get:3 http://security.debian.org/ wheezy/updates/main perl amd64 5.14.2-21+deb7u6 [4434 kB] Get:4 http://security.debian.org/ wheezy/updates/main perl-base amd64 5.14.2-21+deb7u6 [1534 kB] Get:5 http://security.debian.org/ wheezy/updates/main perl-modules all 5.14.2-21+deb7u6 [3441 kB] Get:6 http://security.debian.org/ wheezy/updates/main libc-bin amd64 2.13-38+deb7u12 [1275 kB] Get:7 http://security.debian.org/ wheezy/updates/main libc6 amd64 2.13-38+deb7u12 [4226 kB] Get:8 http://security.debian.org/ wheezy/updates/main libdb5.1 amd64 5.1.29-5+deb7u1 [723 kB] Get:9 http://security.debian.org/ wheezy/updates/main tar amd64 1.26+dfsg-0.1+deb7u1 [984 kB] Get:10 http://security.debian.org/ wheezy/updates/main libgcrypt11 amd64 1.5.0-5+deb7u6 [301 kB] Get:11 http://security.debian.org/ wheezy/updates/main libtasn1-3 amd64 2.13-2+deb7u5 [68.9 kB] Get:12 http://security.debian.org/ wheezy/updates/main libicu48 amd64 4.8.1.1-12+deb7u7 [4659 kB] Get:13 http://security.debian.org/ wheezy/updates/main libxml2 amd64 2.8.0+dfsg1-7+wheezy12 [907 kB] Get:14 http://security.debian.org/ wheezy/updates/main libxslt1.1 amd64 1.1.26-14.1+deb7u3 [255 kB] Get:15 http://security.debian.org/ wheezy/updates/main libffi5 amd64 3.0.10-3+deb7u2 [25.5 kB] Get:16 http://security.debian.org/ wheezy/updates/main gpgv amd64 1.4.12-7+deb7u9 [229 kB] Get:17 http://security.debian.org/ wheezy/updates/main gnupg amd64 1.4.12-7+deb7u9 [1954 kB] Get:18 http://security.debian.org/ wheezy/updates/main passwd amd64 1:4.1.5.1-1+deb7u1 [1262 kB] Get:19 http://security.debian.org/ wheezy/updates/main sensible-utils all 0.0.7+deb7u1 [9000 B] Get:20 http://security.debian.org/ wheezy/updates/main tzdata all 2018e-0+deb7u1 [496 kB] Get:21 http://security.debian.org/ wheezy/updates/main multiarch-support amd64 2.13-38+deb7u12 [152 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 29.4 MB in 2s (14.3 MB/s) (Reading database ... 8661 files and directories currently installed.) Preparing to replace bash 4.2+dfsg-0.1+deb7u3 (using .../bash_4.2+dfsg-0.1+deb7u4_amd64.deb) ... Unpacking replacement bash ... Setting up bash (4.2+dfsg-0.1+deb7u4) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 8661 files and directories currently installed.) Preparing to replace login 1:4.1.5.1-1 (using .../login_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement login ... Setting up login (1:4.1.5.1-1+deb7u1) ... (Reading database ... 8661 files and directories currently installed.) Preparing to replace perl 5.14.2-21+deb7u3 (using .../perl_5.14.2-21+deb7u6_amd64.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.14.2-21+deb7u3 (using .../perl-base_5.14.2-21+deb7u6_amd64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-21+deb7u6) ... (Reading database ... 8661 files and directories currently installed.) Preparing to replace perl-modules 5.14.2-21+deb7u3 (using .../perl-modules_5.14.2-21+deb7u6_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libc-bin 2.13-38+deb7u10 (using .../libc-bin_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-38+deb7u12) ... (Reading database ... 8662 files and directories currently installed.) Preparing to replace libc6:amd64 2.13-38+deb7u10 (using .../libc6_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc6:amd64 ... Setting up libc6:amd64 (2.13-38+deb7u12) ... (Reading database ... 8662 files and directories currently installed.) Preparing to replace libdb5.1:amd64 5.1.29-5 (using .../libdb5.1_5.1.29-5+deb7u1_amd64.deb) ... Unpacking replacement libdb5.1:amd64 ... Setting up libdb5.1:amd64 (5.1.29-5+deb7u1) ... (Reading database ... 8662 files and directories currently installed.) Preparing to replace tar 1.26+dfsg-0.1 (using .../tar_1.26+dfsg-0.1+deb7u1_amd64.deb) ... Unpacking replacement tar ... Setting up tar (1.26+dfsg-0.1+deb7u1) ... (Reading database ... 8662 files and directories currently installed.) Preparing to replace libgcrypt11:amd64 1.5.0-5+deb7u4 (using .../libgcrypt11_1.5.0-5+deb7u6_amd64.deb) ... Unpacking replacement libgcrypt11:amd64 ... Preparing to replace libtasn1-3:amd64 2.13-2+deb7u2 (using .../libtasn1-3_2.13-2+deb7u5_amd64.deb) ... Unpacking replacement libtasn1-3:amd64 ... Preparing to replace libicu48:amd64 4.8.1.1-12+deb7u3 (using .../libicu48_4.8.1.1-12+deb7u7_amd64.deb) ... Unpacking replacement libicu48:amd64 ... Preparing to replace libxml2:amd64 2.8.0+dfsg1-7+wheezy5 (using .../libxml2_2.8.0+dfsg1-7+wheezy12_amd64.deb) ... Unpacking replacement libxml2:amd64 ... Preparing to replace libxslt1.1:amd64 1.1.26-14.1 (using .../libxslt1.1_1.1.26-14.1+deb7u3_amd64.deb) ... Unpacking replacement libxslt1.1:amd64 ... Preparing to replace libffi5:amd64 3.0.10-3 (using .../libffi5_3.0.10-3+deb7u2_amd64.deb) ... Unpacking replacement libffi5:amd64 ... Preparing to replace gpgv 1.4.12-7+deb7u7 (using .../gpgv_1.4.12-7+deb7u9_amd64.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.12-7+deb7u9) ... (Reading database ... 8662 files and directories currently installed.) Preparing to replace gnupg 1.4.12-7+deb7u7 (using .../gnupg_1.4.12-7+deb7u9_amd64.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.12-7+deb7u9) ... (Reading database ... 8662 files and directories currently installed.) Preparing to replace passwd 1:4.1.5.1-1 (using .../passwd_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement passwd ... Setting up passwd (1:4.1.5.1-1+deb7u1) ... (Reading database ... 8662 files and directories currently installed.) Preparing to replace sensible-utils 0.0.7 (using .../sensible-utils_0.0.7+deb7u1_all.deb) ... Unpacking replacement sensible-utils ... Setting up sensible-utils (0.0.7+deb7u1) ... (Reading database ... 8662 files and directories currently installed.) Preparing to replace tzdata 2016d-0+deb7u1 (using .../tzdata_2018e-0+deb7u1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2018e-0+deb7u1) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Sep 12 22:32:28 UTC 2018. Universal Time is now: Wed Sep 12 22:32:28 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 8674 files and directories currently installed.) Preparing to replace multiarch-support 2.13-38+deb7u10 (using .../multiarch-support_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-38+deb7u12) ... Setting up libgcrypt11:amd64 (1.5.0-5+deb7u6) ... Setting up libtasn1-3:amd64 (2.13-2+deb7u5) ... Setting up libicu48:amd64 (4.8.1.1-12+deb7u7) ... Setting up libxml2:amd64 (2.8.0+dfsg1-7+wheezy12) ... Setting up libxslt1.1:amd64 (1.1.26-14.1+deb7u3) ... Setting up libffi5:amd64 (3.0.10-3+deb7u2) ... Setting up perl-modules (5.14.2-21+deb7u6) ... Setting up perl (5.14.2-21+deb7u6) ... 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-get', '-yf', 'dist-upgrade'] 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m22.0s DUMP: fb1ccc436f778eea085ae099e3151787 - 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-cache', 'show', '--no-all-versions', 'libbiococoa2'] 0m22.0s DUMP: Package: libbiococoa2 Source: biococoa (2.2.2-1) Version: 2.2.2-1+b2 Installed-Size: 526 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: gnustep-base-runtime (>= 1.22.1), libc6 (>= 2.3.4), libgnustep-base1.22 (>= 1.22.1), libobjc4 (>= 4.2.1), gnustep-fslayout-fhs Description-en: Bioinformatics framework for GNUstep and Cocoa (library files) BioCocoa is an open source Cocoa framework for bioinformatics. It intends to provide Cocoa programmers with a full suite of tools for handling and manipulating biological sequences. Cocoa is a great framework for rapid application development and it is therefore often used to create innovative bioscientific apps. To speed up development even more, BioCocoa wants to offer reusable Cocoa classes that are specific for molecular biology and biofinformatics. At this time, BioCocoa offers model classes for biological sequences, controller classes for alignment, sequence manipulation and I/O, interfacing with ENTREZ and view classes that let you easily display and work with sequences in your own applications. . This package contains the runtime libraries. Homepage: http://bioinformatics.org/biococoa/ Description-md5: 47504dce77c3c51f2bbf44340f794f01 Tag: role::shared-lib Section: libs Priority: optional Filename: pool/main/b/biococoa/libbiococoa2_2.2.2-1+b2_amd64.deb Size: 157546 MD5sum: 7a7ee68020525eb548bbc158320a5741 SHA1: e67dd7c6bb749934519a604badd7155104477c93 SHA256: 087b0dd3a72ca726c5f4fb58d889b04636fdd803f0f62bf5da015ac49df29628 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-cache', 'show', '--no-all-versions', 'libbiococoa2'] 0m22.0s INFO: apt-cache knows about the following packages: libbiococoa2 0m22.0s INFO: Running scripts pre_install 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_database-server'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_database-server'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_exceptions'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_exceptions'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_extras'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_extras'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_foreign_architecture'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-cache', 'policy'] 0m22.1s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main Translation-en 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-cache', 'policy'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-cache', 'policy', 'libbiococoa2'] 0m22.1s DUMP: libbiococoa2: Installed: 2.2.2-1+b2 Candidate: 2.2.2-1+b2 Version table: *** 2.2.2-1+b2 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m22.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-cache', 'policy', 'libbiococoa2'] 0m22.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-get', '-y', 'install', 'libbiococoa2'] 0m22.3s DUMP: Reading package lists... Building dependency tree... Reading state information... libbiococoa2 is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-get', '-y', 'install', 'libbiococoa2'] 0m22.3s INFO: Running scripts post_install 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_install_exceptions'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_install_exceptions'] 0m22.3s INFO: Running scripts post_distupgrade 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_distupgrade_exceptions'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_distupgrade_exceptions'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_distupgrade_zz_backports'] 0m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_distupgrade_zz_backports'] 0m22.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5SvyTB'] 0m22.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5SvyTB'] 0m22.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5SvyTB'] 0m23.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5SvyTB'] 0m23.6s INFO: Running scripts pre_install 0m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_database-server'] 0m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_database-server'] 0m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_exceptions'] 0m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_exceptions'] 0m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_extras'] 0m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_extras'] 0m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-cache', 'policy'] 0m23.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main Translation-en 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-cache', 'policy'] 0m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-cache', 'policy', 'libbiococoa2'] 0m23.7s DUMP: libbiococoa2: Installed: 2.2.2-1+b2 Candidate: 2.2.2-1+b2 Version table: *** 2.2.2-1+b2 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m23.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-cache', 'policy', 'libbiococoa2'] 0m23.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-get', '-y', 'install', 'libbiococoa2=2.2.2-1+b2'] 0m24.0s DUMP: Reading package lists... Building dependency tree... Reading state information... libbiococoa2 is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m24.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-get', '-y', 'install', 'libbiococoa2=2.2.2-1+b2'] 0m24.0s INFO: Running scripts post_install 0m24.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_install_exceptions'] 0m24.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_install_exceptions'] 0m24.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5SvyTB'] 0m24.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5SvyTB'] 0m24.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m24.6s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u4 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u9 install ok installed gnustep-base-common gnustep-base-common 1.22.1-4+deb7u1 install ok installed gnustep-base-runtime gnustep-base-runtime 1.22.1-4+deb7u1 install ok installed gnustep-common gnustep-common 2.6.2-2 install ok installed gpgv gpgv 1.4.12-7+deb7u9 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libavahi-client3:amd64 libavahi-client3 0.6.31-2 install ok installed libavahi-common-data:amd64 libavahi-common-data 0.6.31-2 install ok installed libavahi-common3:amd64 libavahi-common3 0.6.31-2 install ok installed libbiococoa2 libbiococoa2 2.2.2-1+b2 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u12 install ok installed libc6:amd64 libc6 2.13-38+deb7u12 install ok installed libclass-isa-perl libclass-isa-perl 0.36-3 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5+deb7u1 install ok installed libdbus-1-3:amd64 libdbus-1-3 1.6.8-1+deb7u6 install ok installed libffi5:amd64 libffi5 3.0.10-3+deb7u2 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed libgcrypt11:amd64 libgcrypt11 1.5.0-5+deb7u6 install ok installed libgdbm3:amd64 libgdbm3 1.8.3-11 install ok installed libgnustep-base1.22 libgnustep-base1.22 1.22.1-4+deb7u1 install ok installed libgnutls26:amd64 libgnutls26 2.12.20-8+deb7u5 install ok installed libgpg-error0:amd64 libgpg-error0 1.10-3.1 install ok installed libicu48:amd64 libicu48 4.8.1.1-12+deb7u7 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libobjc4:amd64 libobjc4 4.7.2-5 install ok installed libp11-kit0:amd64 libp11-kit0 0.12-3 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libswitch-perl libswitch-perl 2.16-2 install ok installed libtasn1-3:amd64 libtasn1-3 2.13-2+deb7u5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed libxml2:amd64 libxml2 2.8.0+dfsg1-7+wheezy12 install ok installed libxslt1.1:amd64 libxslt1.1 1.1.26-14.1+deb7u3 install ok installed login login 1:4.1.5.1-1+deb7u1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u12 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1+deb7u1 install ok installed perl perl 5.14.2-21+deb7u6 install ok installed perl-base perl-base 5.14.2-21+deb7u6 install ok installed perl-modules perl-modules 5.14.2-21+deb7u6 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7+deb7u1 install ok installed sgml-base sgml-base 1.26+nmu4 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1+deb7u1 install ok installed tzdata tzdata 2018e-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xml-core xml-core 0.13+nmu2 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m24.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m25.3s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', '-ac', '--ignore-obsolete'] 0m26.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', '-ac', '--ignore-obsolete'] 0m26.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m26.2s DUMP: 0.15.1 0m26.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m26.2s INFO: Running adequate version 0.15.1 now. 0m26.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'libbiococoa2'] 0m26.4s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'libbiococoa2'] 0m26.4s INFO: Running scripts pre_remove 0m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m26.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m26.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m26.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m26.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m27.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m27.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_remove_exceptions'] 0m27.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/pre_remove_exceptions'] 0m27.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-get', 'remove', 'libxml2:amd64', 'libgcrypt11:amd64', 'libffi5:amd64', 'xml-core', 'libicu48:amd64', 'libgnustep-base1.22', 'libtasn1-3:amd64', 'libclass-isa-perl', 'perl-modules', 'libdbus-1-3:amd64', 'libswitch-perl', 'libgdbm3:amd64', 'perl', 'gnustep-base-runtime', 'sgml-base', 'libxslt1.1:amd64', 'libgpg-error0:amd64', 'gnustep-common', 'libobjc4:amd64', 'gnustep-base-common', 'libavahi-common-data:amd64', 'libgnutls26:amd64', 'libavahi-common3:amd64', 'libavahi-client3:amd64', 'libp11-kit0:amd64', 'libbiococoa2'] 0m28.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: gnustep-base-common gnustep-base-runtime gnustep-common libavahi-client3 libavahi-common-data libavahi-common3 libbiococoa2 libclass-isa-perl libdbus-1-3 libffi5 libgcrypt11 libgdbm3 libgnustep-base1.22 libgnutls26 libgpg-error0 libicu48 libobjc4 libp11-kit0 libswitch-perl libtasn1-3 libxml2 libxslt1.1 perl perl-modules sgml-base xml-core 0 upgraded, 0 newly installed, 26 to remove and 0 not upgraded. After this operation, 70.2 MB disk space will be freed. (Reading database ... 8674 files and directories currently installed.) Removing libbiococoa2 ... Removing gnustep-base-runtime ... invoke-rc.d: policy-rc.d denied execution of stop. Removing libgnustep-base1.22 ... Removing gnustep-base-common ... Removing gnustep-common ... Removing libavahi-client3:amd64 ... Removing libavahi-common3:amd64 ... Removing libavahi-common-data:amd64 ... Removing xml-core ... Removing sgml-base ... Removing libdbus-1-3:amd64 ... Removing libffi5:amd64 ... Removing libxslt1.1:amd64 ... Removing libgnutls26:amd64 ... Removing libgcrypt11:amd64 ... Removing libgpg-error0:amd64 ... Removing libicu48:amd64 ... Removing libobjc4:amd64 ... Removing libp11-kit0:amd64 ... Removing libtasn1-3:amd64 ... Removing libxml2:amd64 ... Removing perl ... Removing perl-modules ... Removing libswitch-perl ... Removing libclass-isa-perl ... Removing libgdbm3:amd64 ... 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-get', 'remove', 'libxml2:amd64', 'libgcrypt11:amd64', 'libffi5:amd64', 'xml-core', 'libicu48:amd64', 'libgnustep-base1.22', 'libtasn1-3:amd64', 'libclass-isa-perl', 'perl-modules', 'libdbus-1-3:amd64', 'libswitch-perl', 'libgdbm3:amd64', 'perl', 'gnustep-base-runtime', 'sgml-base', 'libxslt1.1:amd64', 'libgpg-error0:amd64', 'gnustep-common', 'libobjc4:amd64', 'gnustep-base-common', 'libavahi-common-data:amd64', 'libgnutls26:amd64', 'libavahi-common3:amd64', 'libavahi-client3:amd64', 'libp11-kit0:amd64', 'libbiococoa2'] 0m28.6s INFO: Running scripts post_remove 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_remove_exceptions'] 0m28.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_remove_exceptions'] 0m28.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'dpkg', '--purge', 'libxml2:amd64', 'libgcrypt11:amd64', 'libffi5:amd64', 'xml-core', 'libicu48:amd64', 'libgnustep-base1.22', 'libtasn1-3:amd64', 'libclass-isa-perl', 'perl-modules', 'libdbus-1-3:amd64', 'libswitch-perl', 'libgdbm3:amd64', 'perl', 'gnustep-base-runtime', 'sgml-base', 'libxslt1.1:amd64', 'libgpg-error0:amd64', 'gnustep-common', 'libobjc4:amd64', 'gnustep-base-common', 'libavahi-common-data:amd64', 'libgnutls26:amd64', 'libavahi-common3:amd64', 'libavahi-client3:amd64', 'libp11-kit0:amd64'] 0m28.8s DUMP: (Reading database ... 6792 files and directories currently installed.) Removing libxml2:amd64 ... Purging configuration files for libxml2:amd64 ... Removing libgcrypt11:amd64 ... Purging configuration files for libgcrypt11:amd64 ... Removing libffi5:amd64 ... Purging configuration files for libffi5:amd64 ... Removing xml-core ... Purging configuration files for xml-core ... dpkg: warning: while removing xml-core, directory '/etc/sgml' not empty so not removed dpkg: warning: while removing xml-core, directory '/etc/xml' not empty so not removed Removing libicu48:amd64 ... Purging configuration files for libicu48:amd64 ... Removing libgnustep-base1.22 ... Purging configuration files for libgnustep-base1.22 ... Removing libtasn1-3:amd64 ... Purging configuration files for libtasn1-3:amd64 ... dpkg: warning: ignoring request to remove libclass-isa-perl which isn't installed Removing perl-modules ... Purging configuration files for perl-modules ... Removing libdbus-1-3:amd64 ... Purging configuration files for libdbus-1-3:amd64 ... dpkg: warning: ignoring request to remove libswitch-perl which isn't installed Removing libgdbm3:amd64 ... Purging configuration files for libgdbm3:amd64 ... dpkg: warning: ignoring request to remove perl which isn't installed Removing gnustep-base-runtime ... Purging configuration files for gnustep-base-runtime ... Removing sgml-base ... Purging configuration files for sgml-base ... Removing libxslt1.1:amd64 ... Purging configuration files for libxslt1.1:amd64 ... Removing libgpg-error0:amd64 ... Purging configuration files for libgpg-error0:amd64 ... Removing gnustep-common ... Purging configuration files for gnustep-common ... Removing libobjc4:amd64 ... Purging configuration files for libobjc4:amd64 ... Removing gnustep-base-common ... Purging configuration files for gnustep-base-common ... dpkg: warning: ignoring request to remove libavahi-common-data which isn't installed Removing libgnutls26:amd64 ... Purging configuration files for libgnutls26:amd64 ... Removing libavahi-common3:amd64 ... Purging configuration files for libavahi-common3:amd64 ... Removing libavahi-client3:amd64 ... Purging configuration files for libavahi-client3:amd64 ... Removing libp11-kit0:amd64 ... Purging configuration files for libp11-kit0:amd64 ... 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'dpkg', '--purge', 'libxml2:amd64', 'libgcrypt11:amd64', 'libffi5:amd64', 'xml-core', 'libicu48:amd64', 'libgnustep-base1.22', 'libtasn1-3:amd64', 'libclass-isa-perl', 'perl-modules', 'libdbus-1-3:amd64', 'libswitch-perl', 'libgdbm3:amd64', 'perl', 'gnustep-base-runtime', 'sgml-base', 'libxslt1.1:amd64', 'libgpg-error0:amd64', 'gnustep-common', 'libobjc4:amd64', 'gnustep-base-common', 'libavahi-common-data:amd64', 'libgnutls26:amd64', 'libavahi-common3:amd64', 'libavahi-client3:amd64', 'libp11-kit0:amd64'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'dpkg', '--purge', 'libbiococoa2'] 0m28.8s DUMP: dpkg: warning: ignoring request to remove libbiococoa2 which isn't installed 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'dpkg', '--purge', 'libbiococoa2'] 0m28.8s INFO: Running scripts post_purge 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_purge_exceptions'] 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_purge_exceptions'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'dpkg', '--purge', '--pending'] 0m28.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'dpkg', '--purge', '--pending'] 0m28.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'dpkg', '--remove', '--pending'] 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'dpkg', '--remove', '--pending'] 0m28.9s INFO: Running scripts post_test 0m28.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_test_exceptions'] 0m28.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'tmp/scripts/post_test_exceptions'] 0m28.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5SvyTB'] 0m29.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5SvyTB'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'dpkg-divert', '--list'] 0m29.5s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'dpkg-divert', '--list'] 0m29.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-get', 'clean'] 0m29.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5SvyTB', 'apt-get', 'clean'] 0m29.5s DEBUG: Recording chroot state 0m30.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/run/shm'] 0m30.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/run/shm'] 0m30.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/dev/console'] 0m30.9s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/dev/console'] 0m30.9s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/dev/ptmx'] 0m31.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/dev/ptmx'] 0m31.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/dev/pts'] 0m31.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/dev/pts'] 0m31.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/proc'] 0m31.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5SvyTB/proc'] 0m31.0s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp5SvyTB'] 0m31.1s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp5SvyTB'] 0m31.1s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp5SvyTB 0m31.1s INFO: PASS: Upgrading between Debian distributions. 0m31.1s INFO: PASS: All tests. 0m31.1s INFO: piuparts run ends. ret=0 End: 2018-09-12 22:32:37 UTC