Start: 2018-06-28 23:44:35 UTC [wheezy] Package: libhmsbeagle-dev Source: libhmsbeagle Version: 1.0-6 Installed-Size: 4050 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libhmsbeagle1 (= 1.0-6) Description: High-performance lib for Bayesian and Maximum Likelihood phylogenetics Homepage: http://code.google.com/p/beagle-lib Description-md5: 09c3f8ac2909eee32f51ee7442c8bfff Tag: devel::library, role::devel-lib Section: libdevel Priority: extra Filename: pool/main/libh/libhmsbeagle/libhmsbeagle-dev_1.0-6_amd64.deb Size: 606042 MD5sum: cd97030bb5ef3d1f2d70c490d950f58d SHA1: 91c40621090e6ef0aae2ef5971f6a9926647688d SHA256: b9dec38f5cc39428a95873f585d532ef8ea68f7ec0514bfb1dfaa81e35431509 [wheezy-lts] Package: libhmsbeagle-dev Source: libhmsbeagle Version: 1.0-6 Installed-Size: 4050 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libhmsbeagle1 (= 1.0-6) Description: High-performance lib for Bayesian and Maximum Likelihood phylogenetics Homepage: http://code.google.com/p/beagle-lib Description-md5: 09c3f8ac2909eee32f51ee7442c8bfff Tag: devel::library, role::devel-lib Section: libdevel Priority: extra Filename: pool/main/libh/libhmsbeagle/libhmsbeagle-dev_1.0-6_amd64.deb Size: 606042 MD5sum: cd97030bb5ef3d1f2d70c490d950f58d SHA1: 91c40621090e6ef0aae2ef5971f6a9926647688d SHA256: b9dec38f5cc39428a95873f585d532ef8ea68f7ec0514bfb1dfaa81e35431509 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d wheezy-lts -B reference-chroot-metadata.dat --apt libhmsbeagle-dev=1.0-6 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.90~201806121501~0.89-1-g6355f063 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d wheezy-lts -B reference-chroot-metadata.dat --apt libhmsbeagle-dev=1.0-6 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-6-amd64 #1 SMP Debian 4.9.88-1+deb9u1 (2018-05-07) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp7mVHEN 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp7mVHEN 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.6s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/proc'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/proc'] 0m1.6s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/dev/pts'] 0m1.6s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/dev/pts'] 0m1.6s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/run/shm'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/run/shm'] 0m1.7s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main 0m1.7s DEBUG: Created policy-rc.d and chmodded it. 0m1.7s DEBUG: Created resolv.conf. 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp7mVHEN/tmp/scripts/ 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts-wheezy to /srv/piuparts.debian.org/tmp/tmp7mVHEN/tmp/scripts/ 0m1.7s INFO: Running scripts post_chroot_unpack 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-get', 'update'] 0m3.9s DUMP: Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Reading package lists... 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-get', 'update'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-get', '-yf', 'dist-upgrade'] 0m4.0s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-get', '-yf', 'dist-upgrade'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.2s DUMP: 0c96df6df725ee7ec7aebd2b6a77fb72 - 0m4.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.2s INFO: Running scripts post_setup 0m4.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_setup_dummy_users'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_setup_dummy_users'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_setup_forbid_home'] 0m4.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_setup_forbid_home'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_setup_minimize'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_setup_minimize'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m5.8s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 335 kB of archives. After this operation, 1327 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 335 kB in 0s (15.2 MB/s) Selecting previously unselected package adduser. (Reading database ... 6639 files and directories currently installed.) Unpacking adduser (from .../adduser_3.113+nmu3_all.deb) ... Selecting previously unselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ... Moving old data out of the way Setting up adduser (3.113+nmu3) ... Setting up ucf (3.0025+nmu3) ... 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_setup_zz_backports'] 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_setup_zz_backports'] 0m5.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.8s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m5.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.8s DEBUG: Loading chroot meta data from reference-chroot-metadata.dat 0m6.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7mVHEN'] 0m6.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7mVHEN'] 0m6.8s INFO: Running scripts is_testable 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/is_testable_uninstallable'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/is_testable_uninstallable'] 0m6.8s INFO: Running scripts pre_test 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_test_exceptions'] 0m6.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_test_exceptions'] 0m6.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_test_root_password'] 0m6.9s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_test_root_password'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-cache', 'show', '--no-all-versions', 'libhmsbeagle-dev'] 0m6.9s DUMP: Package: libhmsbeagle-dev Source: libhmsbeagle Version: 1.0-6 Installed-Size: 4050 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libhmsbeagle1 (= 1.0-6) Description-en: High-performance lib for Bayesian and Maximum Likelihood phylogenetics BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages. It can make use of highly-parallel processors such as those in graphics cards (GPUs) found in many PCs. . The project involves an open API and fast implementations of a library for evaluating phylogenetic likelihoods (continuous time Markov processes) of biomolecular sequence evolution. . The aim is to provide high performance evaluation 'services' to a wide range of phylogenetic software, both Bayesian samplers and Maximum Likelihood optimizers. This allows these packages to make use of implementations that make use of optimized hardware such as graphics processing units. . This package contains development files needed to build against Beagle library. Homepage: http://code.google.com/p/beagle-lib Description-md5: 09c3f8ac2909eee32f51ee7442c8bfff Tag: devel::library, role::devel-lib Section: libdevel Priority: extra Filename: pool/main/libh/libhmsbeagle/libhmsbeagle-dev_1.0-6_amd64.deb Size: 606042 MD5sum: cd97030bb5ef3d1f2d70c490d950f58d SHA1: 91c40621090e6ef0aae2ef5971f6a9926647688d SHA256: b9dec38f5cc39428a95873f585d532ef8ea68f7ec0514bfb1dfaa81e35431509 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-cache', 'show', '--no-all-versions', 'libhmsbeagle-dev'] 0m6.9s INFO: apt-cache knows about the following packages: libhmsbeagle-dev 0m6.9s INFO: Running scripts pre_install 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_database-server'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_database-server'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_exceptions'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_exceptions'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_extras'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_extras'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-cache', 'policy'] 0m7.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m7.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-cache', 'policy'] 0m7.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-cache', 'policy', 'libhmsbeagle-dev'] 0m7.1s DUMP: libhmsbeagle-dev: Installed: (none) Candidate: 1.0-6 Version table: 1.0-6 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-cache', 'policy', 'libhmsbeagle-dev'] 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-get', '-y', 'install', 'libhmsbeagle-dev'] 0m7.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: libhmsbeagle1 The following NEW packages will be installed: libhmsbeagle-dev libhmsbeagle1 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 747 kB of archives. After this operation, 4573 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main libhmsbeagle1 amd64 1.0-6 [141 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main libhmsbeagle-dev amd64 1.0-6 [606 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 747 kB in 0s (10.0 MB/s) Selecting previously unselected package libhmsbeagle1. (Reading database ... 6768 files and directories currently installed.) Unpacking libhmsbeagle1 (from .../libhmsbeagle1_1.0-6_amd64.deb) ... Selecting previously unselected package libhmsbeagle-dev. Unpacking libhmsbeagle-dev (from .../libhmsbeagle-dev_1.0-6_amd64.deb) ... Setting up libhmsbeagle1 (1.0-6) ... Setting up libhmsbeagle-dev (1.0-6) ... 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-get', '-y', 'install', 'libhmsbeagle-dev'] 0m7.8s INFO: Running scripts post_install 0m7.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_install_exceptions'] 0m7.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_install_exceptions'] 0m7.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7mVHEN'] 0m8.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7mVHEN'] 0m8.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp7mVHEN to wheezy-lts 0m8.3s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main deb http://security.debian.org wheezy/updates main 0m8.3s INFO: Running scripts pre_distupgrade 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_distupgrade_exceptions'] 0m8.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_distupgrade_wheezy'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_distupgrade_wheezy'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m8.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-get', 'update'] 0m10.4s DUMP: Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Get:1 http://security.debian.org wheezy/updates Release.gpg [1601 B] Get:2 http://security.debian.org wheezy/updates Release [52.3 kB] Get:3 http://security.debian.org wheezy/updates/main amd64 Packages [589 kB] Get:4 http://security.debian.org wheezy/updates/main Translation-en [338 kB] Fetched 981 kB in 0s (1025 kB/s) Reading package lists... 0m10.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-get', 'update'] 0m10.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-get', '-yf', 'dist-upgrade'] 0m15.2s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: bash gnupg gpgv libc-bin libc6 libdb5.1 login multiarch-support passwd perl-base sensible-utils tar tzdata 13 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 15.3 MB of archives. After this operation, 664 kB of additional disk space will be used. Get:1 http://security.debian.org/ wheezy/updates/main bash amd64 4.2+dfsg-0.1+deb7u4 [1499 kB] Get:2 http://security.debian.org/ wheezy/updates/main login amd64 1:4.1.5.1-1+deb7u1 [984 kB] Get:3 http://security.debian.org/ wheezy/updates/main perl-base amd64 5.14.2-21+deb7u6 [1534 kB] Get:4 http://security.debian.org/ wheezy/updates/main tar amd64 1.26+dfsg-0.1+deb7u1 [984 kB] Get:5 http://security.debian.org/ wheezy/updates/main libc-bin amd64 2.13-38+deb7u12 [1275 kB] Get:6 http://security.debian.org/ wheezy/updates/main libc6 amd64 2.13-38+deb7u12 [4226 kB] Get:7 http://security.debian.org/ wheezy/updates/main libdb5.1 amd64 5.1.29-5+deb7u1 [723 kB] Get:8 http://security.debian.org/ wheezy/updates/main gpgv amd64 1.4.12-7+deb7u9 [229 kB] Get:9 http://security.debian.org/ wheezy/updates/main gnupg amd64 1.4.12-7+deb7u9 [1954 kB] Get:10 http://security.debian.org/ wheezy/updates/main passwd amd64 1:4.1.5.1-1+deb7u1 [1262 kB] Get:11 http://security.debian.org/ wheezy/updates/main sensible-utils all 0.0.7+deb7u1 [9000 B] Get:12 http://security.debian.org/ wheezy/updates/main tzdata all 2018e-0+deb7u1 [496 kB] Get:13 http://security.debian.org/ wheezy/updates/main multiarch-support amd64 2.13-38+deb7u12 [152 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 15.3 MB in 1s (10.5 MB/s) (Reading database ... 7108 files and directories currently installed.) Preparing to replace bash 4.2+dfsg-0.1+deb7u3 (using .../bash_4.2+dfsg-0.1+deb7u4_amd64.deb) ... Unpacking replacement bash ... Setting up bash (4.2+dfsg-0.1+deb7u4) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 7108 files and directories currently installed.) Preparing to replace login 1:4.1.5.1-1 (using .../login_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement login ... Setting up login (1:4.1.5.1-1+deb7u1) ... (Reading database ... 7108 files and directories currently installed.) Preparing to replace perl-base 5.14.2-21+deb7u3 (using .../perl-base_5.14.2-21+deb7u6_amd64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-21+deb7u6) ... (Reading database ... 7108 files and directories currently installed.) Preparing to replace tar 1.26+dfsg-0.1 (using .../tar_1.26+dfsg-0.1+deb7u1_amd64.deb) ... Unpacking replacement tar ... Setting up tar (1.26+dfsg-0.1+deb7u1) ... (Reading database ... 7108 files and directories currently installed.) Preparing to replace libc-bin 2.13-38+deb7u10 (using .../libc-bin_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-38+deb7u12) ... (Reading database ... 7108 files and directories currently installed.) Preparing to replace libc6:amd64 2.13-38+deb7u10 (using .../libc6_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc6:amd64 ... Setting up libc6:amd64 (2.13-38+deb7u12) ... (Reading database ... 7108 files and directories currently installed.) Preparing to replace libdb5.1:amd64 5.1.29-5 (using .../libdb5.1_5.1.29-5+deb7u1_amd64.deb) ... Unpacking replacement libdb5.1:amd64 ... Setting up libdb5.1:amd64 (5.1.29-5+deb7u1) ... (Reading database ... 7108 files and directories currently installed.) Preparing to replace gpgv 1.4.12-7+deb7u7 (using .../gpgv_1.4.12-7+deb7u9_amd64.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.12-7+deb7u9) ... (Reading database ... 7108 files and directories currently installed.) Preparing to replace gnupg 1.4.12-7+deb7u7 (using .../gnupg_1.4.12-7+deb7u9_amd64.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.12-7+deb7u9) ... (Reading database ... 7108 files and directories currently installed.) Preparing to replace passwd 1:4.1.5.1-1 (using .../passwd_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement passwd ... Setting up passwd (1:4.1.5.1-1+deb7u1) ... (Reading database ... 7108 files and directories currently installed.) Preparing to replace sensible-utils 0.0.7 (using .../sensible-utils_0.0.7+deb7u1_all.deb) ... Unpacking replacement sensible-utils ... Setting up sensible-utils (0.0.7+deb7u1) ... (Reading database ... 7108 files and directories currently installed.) Preparing to replace tzdata 2016d-0+deb7u1 (using .../tzdata_2018e-0+deb7u1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2018e-0+deb7u1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Jun 28 23:44:50 UTC 2018. Universal Time is now: Thu Jun 28 23:44:50 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 7120 files and directories currently installed.) Preparing to replace multiarch-support 2.13-38+deb7u10 (using .../multiarch-support_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-38+deb7u12) ... 0m15.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-get', '-yf', 'dist-upgrade'] 0m15.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m15.4s DUMP: c16ce146adddf40566e495d132dec083 - 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-cache', 'show', '--no-all-versions', 'libhmsbeagle-dev'] 0m15.4s DUMP: Package: libhmsbeagle-dev Source: libhmsbeagle Version: 1.0-6 Installed-Size: 4050 Maintainer: Debian Med Packaging Team Architecture: amd64 Depends: libhmsbeagle1 (= 1.0-6) Description-en: High-performance lib for Bayesian and Maximum Likelihood phylogenetics BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages. It can make use of highly-parallel processors such as those in graphics cards (GPUs) found in many PCs. . The project involves an open API and fast implementations of a library for evaluating phylogenetic likelihoods (continuous time Markov processes) of biomolecular sequence evolution. . The aim is to provide high performance evaluation 'services' to a wide range of phylogenetic software, both Bayesian samplers and Maximum Likelihood optimizers. This allows these packages to make use of implementations that make use of optimized hardware such as graphics processing units. . This package contains development files needed to build against Beagle library. Homepage: http://code.google.com/p/beagle-lib Description-md5: 09c3f8ac2909eee32f51ee7442c8bfff Tag: devel::library, role::devel-lib Section: libdevel Priority: extra Filename: pool/main/libh/libhmsbeagle/libhmsbeagle-dev_1.0-6_amd64.deb Size: 606042 MD5sum: cd97030bb5ef3d1f2d70c490d950f58d SHA1: 91c40621090e6ef0aae2ef5971f6a9926647688d SHA256: b9dec38f5cc39428a95873f585d532ef8ea68f7ec0514bfb1dfaa81e35431509 0m15.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-cache', 'show', '--no-all-versions', 'libhmsbeagle-dev'] 0m15.4s INFO: apt-cache knows about the following packages: libhmsbeagle-dev 0m15.4s INFO: Running scripts pre_install 0m15.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_database-server'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_database-server'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_exceptions'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_exceptions'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_extras'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_extras'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_foreign_architecture'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-cache', 'policy'] 0m15.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main Translation-en 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-cache', 'policy'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-cache', 'policy', 'libhmsbeagle-dev'] 0m15.5s DUMP: libhmsbeagle-dev: Installed: 1.0-6 Candidate: 1.0-6 Version table: *** 1.0-6 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m15.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-cache', 'policy', 'libhmsbeagle-dev'] 0m15.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-get', '-y', 'install', 'libhmsbeagle-dev'] 0m15.8s DUMP: Reading package lists... Building dependency tree... Reading state information... libhmsbeagle-dev is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-get', '-y', 'install', 'libhmsbeagle-dev'] 0m15.8s INFO: Running scripts post_install 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_install_exceptions'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_install_exceptions'] 0m15.8s INFO: Running scripts post_distupgrade 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_distupgrade_exceptions'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_distupgrade_exceptions'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m15.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_distupgrade_zz_backports'] 0m15.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_distupgrade_zz_backports'] 0m15.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7mVHEN'] 0m16.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7mVHEN'] 0m16.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7mVHEN'] 0m16.9s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7mVHEN'] 0m16.9s INFO: Running scripts pre_install 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_database-server'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_database-server'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_exceptions'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_exceptions'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_extras'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_extras'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-cache', 'policy'] 0m17.0s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main Translation-en 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m17.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-cache', 'policy'] 0m17.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-cache', 'policy', 'libhmsbeagle-dev'] 0m17.1s DUMP: libhmsbeagle-dev: Installed: 1.0-6 Candidate: 1.0-6 Version table: *** 1.0-6 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m17.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-cache', 'policy', 'libhmsbeagle-dev'] 0m17.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-get', '-y', 'install', 'libhmsbeagle-dev=1.0-6'] 0m17.4s DUMP: Reading package lists... Building dependency tree... Reading state information... libhmsbeagle-dev is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-get', '-y', 'install', 'libhmsbeagle-dev=1.0-6'] 0m17.4s INFO: Running scripts post_install 0m17.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_install_exceptions'] 0m17.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_install_exceptions'] 0m17.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7mVHEN'] 0m18.0s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7mVHEN'] 0m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m18.0s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u4 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u9 install ok installed gpgv gpgv 1.4.12-7+deb7u9 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u12 install ok installed libc6:amd64 libc6 2.13-38+deb7u12 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5+deb7u1 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed libhmsbeagle-dev libhmsbeagle-dev 1.0-6 install ok installed libhmsbeagle1 libhmsbeagle1 1.0-6 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1+deb7u1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u12 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1+deb7u1 install ok installed perl-base perl-base 5.14.2-21+deb7u6 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7+deb7u1 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1+deb7u1 install ok installed tzdata tzdata 2018e-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m18.5s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', '-ac', '--ignore-obsolete'] 0m19.1s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', '-ac', '--ignore-obsolete'] 0m19.1s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m19.1s DUMP: 0.15.1 0m19.1s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m19.1s INFO: Running adequate version 0.15.1 now. 0m19.1s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'libhmsbeagle-dev'] 0m19.2s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'libhmsbeagle-dev'] 0m19.2s INFO: Running scripts pre_remove 0m19.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m19.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m19.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m19.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m19.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_remove_exceptions'] 0m19.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/pre_remove_exceptions'] 0m19.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-get', 'remove', 'libhmsbeagle1', 'libhmsbeagle-dev'] 0m20.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: libhmsbeagle-dev libhmsbeagle1 0 upgraded, 0 newly installed, 2 to remove and 0 not upgraded. After this operation, 4573 kB disk space will be freed. (Reading database ... 7120 files and directories currently installed.) Removing libhmsbeagle-dev ... Removing libhmsbeagle1 ... 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-get', 'remove', 'libhmsbeagle1', 'libhmsbeagle-dev'] 0m20.3s INFO: Running scripts post_remove 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_remove_exceptions'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_remove_exceptions'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'dpkg', '--purge', 'libhmsbeagle1'] 0m20.3s DUMP: (Reading database ... 6780 files and directories currently installed.) Removing libhmsbeagle1 ... Purging configuration files for libhmsbeagle1 ... 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'dpkg', '--purge', 'libhmsbeagle1'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'dpkg', '--purge', 'libhmsbeagle-dev'] 0m20.3s DUMP: dpkg: warning: ignoring request to remove libhmsbeagle-dev which isn't installed 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'dpkg', '--purge', 'libhmsbeagle-dev'] 0m20.3s INFO: Running scripts post_purge 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_purge_exceptions'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_purge_exceptions'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'dpkg', '--purge', '--pending'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'dpkg', '--purge', '--pending'] 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'dpkg', '--remove', '--pending'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'dpkg', '--remove', '--pending'] 0m20.3s INFO: Running scripts post_test 0m20.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_test_exceptions'] 0m20.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'tmp/scripts/post_test_exceptions'] 0m20.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7mVHEN'] 0m20.8s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp7mVHEN'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'dpkg-divert', '--list'] 0m20.8s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'dpkg-divert', '--list'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-get', 'clean'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp7mVHEN', 'apt-get', 'clean'] 0m20.8s DEBUG: Recording chroot state 0m22.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/run/shm'] 0m22.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/run/shm'] 0m22.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/dev/console'] 0m22.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/dev/console'] 0m22.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/dev/ptmx'] 0m22.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/dev/ptmx'] 0m22.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/dev/pts'] 0m22.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/dev/pts'] 0m22.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/proc'] 0m22.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp7mVHEN/proc'] 0m22.1s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp7mVHEN'] 0m22.2s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp7mVHEN'] 0m22.2s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp7mVHEN 0m22.2s INFO: PASS: Upgrading between Debian distributions. 0m22.2s INFO: PASS: All tests. 0m22.2s INFO: piuparts run ends. ret=0 End: 2018-06-28 23:44:57 UTC