Start: 2018-06-28 23:15:34 UTC [wheezy] Package: meep-openmpi Version: 1.1.1-9~deb7u2 Installed-Size: 734 Maintainer: Thorsten Alteholz Architecture: amd64 Depends: guile-1.8-libs, libc6 (>= 2.2.5), libctl3 (>= 3.0.3), libfftw3-3, libgcc1 (>= 1:4.1.1), libgmp10, libgsl0ldbl (>= 1.9), libharminv2 (>= 1.3.1), libhdf5-openmpi-7 (>= 1.8.7), libltdl7 (>= 2.4.2), libmeep-openmpi6, libopenmpi1.3, libstdc++6 (>= 4.1.1), zlib1g (>= 1:1.1.4), openmpi-bin Description: software package for FDTD simulation, parallel (OpenMPI) version Homepage: http://ab-initio.mit.edu/wiki/index.php/Meep Description-md5: 24998f4a608b80f56d14fc4fe5643bcc Section: science Priority: optional Filename: pool/main/m/meep-openmpi/meep-openmpi_1.1.1-9~deb7u2_amd64.deb Size: 301798 MD5sum: befbe78fbe47fe494ab81eeb34eba657 SHA1: c921de5a76c29a5c51bd7b1de76474b38f3afb5f SHA256: 2701399166c51a2aa50b3583305d8364be184a8ed9c1aa803caad8c5254235b4 [wheezy-lts] Package: meep-openmpi Version: 1.1.1-9~deb7u2 Installed-Size: 734 Maintainer: Thorsten Alteholz Architecture: amd64 Depends: guile-1.8-libs, libc6 (>= 2.2.5), libctl3 (>= 3.0.3), libfftw3-3, libgcc1 (>= 1:4.1.1), libgmp10, libgsl0ldbl (>= 1.9), libharminv2 (>= 1.3.1), libhdf5-openmpi-7 (>= 1.8.7), libltdl7 (>= 2.4.2), libmeep-openmpi6, libopenmpi1.3, libstdc++6 (>= 4.1.1), zlib1g (>= 1:1.1.4), openmpi-bin Description: software package for FDTD simulation, parallel (OpenMPI) version Homepage: http://ab-initio.mit.edu/wiki/index.php/Meep Description-md5: 24998f4a608b80f56d14fc4fe5643bcc Section: science Priority: optional Filename: pool/main/m/meep-openmpi/meep-openmpi_1.1.1-9~deb7u2_amd64.deb Size: 301798 MD5sum: befbe78fbe47fe494ab81eeb34eba657 SHA1: c921de5a76c29a5c51bd7b1de76474b38f3afb5f SHA256: 2701399166c51a2aa50b3583305d8364be184a8ed9c1aa803caad8c5254235b4 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d wheezy-lts -B reference-chroot-metadata.dat --apt 'meep-openmpi=1.1.1-9~deb7u2' 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.90~201806121501~0.89-1-g6355f063 starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d wheezy-lts -B reference-chroot-metadata.dat --apt 'meep-openmpi=1.1.1-9~deb7u2' 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-6-amd64 #1 SMP Debian 4.9.88-1+deb9u1 (2018-05-07) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpJJ4OR8 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpJJ4OR8 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.7s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/proc'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/proc'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/dev/pts'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/dev/pts'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/dev/ptmx'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/dev/ptmx'] 0m1.7s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/dev/console'] 0m1.7s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/dev/console'] 0m1.7s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/run/shm'] 0m1.7s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/run/shm'] 0m1.7s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main 0m1.7s DEBUG: Created policy-rc.d and chmodded it. 0m1.7s DEBUG: Created resolv.conf. 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpJJ4OR8/tmp/scripts/ 0m1.7s DEBUG: Copying scriptsdir /etc/piuparts/scripts-wheezy to /srv/piuparts.debian.org/tmp/tmpJJ4OR8/tmp/scripts/ 0m1.7s INFO: Running scripts post_chroot_unpack 0m1.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-get', 'update'] 0m3.6s DUMP: Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Reading package lists... 0m3.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-get', 'update'] 0m3.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-get', '-yf', 'dist-upgrade'] 0m3.8s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-get', '-yf', 'dist-upgrade'] 0m3.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.9s DUMP: 0c96df6df725ee7ec7aebd2b6a77fb72 - 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.9s INFO: Running scripts post_setup 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_setup_dummy_users'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_setup_dummy_users'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_setup_forbid_home'] 0m4.8s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_setup_forbid_home'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.8s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_setup_force-unsafe-io'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_setup_minimize'] 0m4.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_setup_minimize'] 0m4.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m5.4s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 335 kB of archives. After this operation, 1327 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 335 kB in 0s (26.7 MB/s) Selecting previously unselected package adduser. (Reading database ... 6639 files and directories currently installed.) Unpacking adduser (from .../adduser_3.113+nmu3_all.deb) ... Selecting previously unselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ... Moving old data out of the way Setting up adduser (3.113+nmu3) ... Setting up ucf (3.0025+nmu3) ... 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_setup_zz_backports'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_setup_zz_backports'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.4s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.4s DEBUG: Loading chroot meta data from reference-chroot-metadata.dat 0m5.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8'] 0m6.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8'] 0m6.3s INFO: Running scripts is_testable 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/is_testable_uninstallable'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/is_testable_uninstallable'] 0m6.3s INFO: Running scripts pre_test 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_test_exceptions'] 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_test_exceptions'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_test_root_password'] 0m6.3s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_test_root_password'] 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-cache', 'show', '--no-all-versions', 'meep-openmpi'] 0m6.3s DUMP: Package: meep-openmpi Version: 1.1.1-9~deb7u2 Installed-Size: 734 Maintainer: Thorsten Alteholz Architecture: amd64 Depends: guile-1.8-libs, libc6 (>= 2.2.5), libctl3 (>= 3.0.3), libfftw3-3, libgcc1 (>= 1:4.1.1), libgmp10, libgsl0ldbl (>= 1.9), libharminv2 (>= 1.3.1), libhdf5-openmpi-7 (>= 1.8.7), libltdl7 (>= 2.4.2), libmeep-openmpi6, libopenmpi1.3, libstdc++6 (>= 4.1.1), zlib1g (>= 1:1.1.4), openmpi-bin Description-en: software package for FDTD simulation, parallel (OpenMPI) version Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulation software package developed at MIT to model electromagnetic systems. . Its features include: * Simulation in 1d, 2d, 3d, and cylindrical coordinates. * Distributed memory parallelism on any system supporting the MPI standard. * Dispersive (including loss/gain) and nonlinear (Kerr & Pockels) materials. Magnetic permeability and electric/magnetic conductivities. * PML absorbing boundaries and/or perfect conductor and/or Bloch-periodic boundary conditions. * Exploitation of symmetries to reduce the computation size . even/odd mirror symmetries and 90/180 degree rotations. * Complete scriptability - either via a Scheme scripting front-end (as in libctl and MPB), or callable as a C++ library. * Field output in the HDF5 standard scientific data format, supported by many visualization tools. * Arbitrary material and source distributions. * Field analyses including flux spectra, frequency extraction, and energy integrals; completely programmable. * Multi-parameter optimization, root-finding, integration, etcetera (via libctl). . This package contains the MPI version of the software. As opposed to meep-mpi this package also contains the OpenMPI version of libhdf5. Homepage: http://ab-initio.mit.edu/wiki/index.php/Meep Description-md5: 24998f4a608b80f56d14fc4fe5643bcc Section: science Priority: optional Filename: pool/main/m/meep-openmpi/meep-openmpi_1.1.1-9~deb7u2_amd64.deb Size: 301798 MD5sum: befbe78fbe47fe494ab81eeb34eba657 SHA1: c921de5a76c29a5c51bd7b1de76474b38f3afb5f SHA256: 2701399166c51a2aa50b3583305d8364be184a8ed9c1aa803caad8c5254235b4 0m6.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-cache', 'show', '--no-all-versions', 'meep-openmpi'] 0m6.3s INFO: apt-cache knows about the following packages: meep-openmpi 0m6.3s INFO: Running scripts pre_install 0m6.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_database-server'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_database-server'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_exceptions'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_exceptions'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_extras'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_extras'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_foreign_architecture'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-cache', 'policy'] 0m6.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-cache', 'policy'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-cache', 'policy', 'meep-openmpi'] 0m6.4s DUMP: meep-openmpi: Installed: (none) Candidate: 1.1.1-9~deb7u2 Version table: 1.1.1-9~deb7u2 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 0m6.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-cache', 'policy', 'meep-openmpi'] 0m6.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-get', '-y', 'install', 'meep-openmpi'] 0m9.1s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: guile-1.8-libs libatlas3-base libctl3 libfftw3-3 libgfortran3 libgmp10 libgomp1 libgsl0ldbl libharminv2 libhdf5-openmpi-7 libibverbs1 libltdl7 libmeep-openmpi6 libnuma1 libopenmpi1.3 libquadmath0 libtorque2 openmpi-bin openmpi-common Suggested packages: liblapack3 libfftw3-bin libfftw3-dev gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html gfortran Recommended packages: openmpi-checkpoint The following NEW packages will be installed: guile-1.8-libs libatlas3-base libctl3 libfftw3-3 libgfortran3 libgmp10 libgomp1 libgsl0ldbl libharminv2 libhdf5-openmpi-7 libibverbs1 libltdl7 libmeep-openmpi6 libnuma1 libopenmpi1.3 libquadmath0 libtorque2 meep-openmpi openmpi-bin openmpi-common 0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded. Need to get 15.8 MB of archives. After this operation, 43.9 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main libgomp1 amd64 4.7.2-5 [27.5 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main libfftw3-3 amd64 3.3.2-3.1 [1665 kB] Get:3 http://mirror-ubc.debian.org/debian/ wheezy/main libquadmath0 amd64 4.7.2-5 [125 kB] Get:4 http://mirror-ubc.debian.org/debian/ wheezy/main libgfortran3 amd64 4.7.2-5 [351 kB] Get:5 http://mirror-ubc.debian.org/debian/ wheezy/main libgmp10 amd64 2:5.0.5+dfsg-2 [250 kB] Get:6 http://mirror-ubc.debian.org/debian/ wheezy/main libltdl7 amd64 2.4.2-1.1 [352 kB] Get:7 http://mirror-ubc.debian.org/debian/ wheezy/main guile-1.8-libs amd64 1.8.8+1-8 [762 kB] Get:8 http://mirror-ubc.debian.org/debian/ wheezy/main libatlas3-base amd64 3.8.4-9+deb7u1 [6880 kB] Get:9 http://mirror-ubc.debian.org/debian/ wheezy/main libctl3 amd64 3.1.0-5 [99.6 kB] Get:10 http://mirror-ubc.debian.org/debian/ wheezy/main libgsl0ldbl amd64 1.15+dfsg.2-2 [1132 kB] Get:11 http://mirror-ubc.debian.org/debian/ wheezy/main libharminv2 amd64 1.3.1-9 [18.4 kB] Get:12 http://mirror-ubc.debian.org/debian/ wheezy/main libibverbs1 amd64 1.1.6-1 [35.3 kB] Get:13 http://mirror-ubc.debian.org/debian/ wheezy/main libnuma1 amd64 2.0.8~rc4-1 [33.7 kB] Get:14 http://mirror-ubc.debian.org/debian/ wheezy/main libtorque2 amd64 2.4.16+dfsg-1+deb7u4 [121 kB] Get:15 http://mirror-ubc.debian.org/debian/ wheezy/main libopenmpi1.3 amd64 1.4.5-1 [1436 kB] Get:16 http://mirror-ubc.debian.org/debian/ wheezy/main libhdf5-openmpi-7 amd64 1.8.8-9+b1 [1463 kB] Get:17 http://mirror-ubc.debian.org/debian/ wheezy/main libmeep-openmpi6 amd64 1.1.1-9~deb7u2 [489 kB] Get:18 http://mirror-ubc.debian.org/debian/ wheezy/main openmpi-common all 1.4.5-1 [101 kB] Get:19 http://mirror-ubc.debian.org/debian/ wheezy/main openmpi-bin amd64 1.4.5-1 [166 kB] Get:20 http://mirror-ubc.debian.org/debian/ wheezy/main meep-openmpi amd64 1.1.1-9~deb7u2 [302 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 15.8 MB in 0s (18.8 MB/s) Selecting previously unselected package libgomp1:amd64. (Reading database ... 6768 files and directories currently installed.) Unpacking libgomp1:amd64 (from .../libgomp1_4.7.2-5_amd64.deb) ... Selecting previously unselected package libfftw3-3:amd64. Unpacking libfftw3-3:amd64 (from .../libfftw3-3_3.3.2-3.1_amd64.deb) ... Selecting previously unselected package libquadmath0:amd64. Unpacking libquadmath0:amd64 (from .../libquadmath0_4.7.2-5_amd64.deb) ... Selecting previously unselected package libgfortran3:amd64. Unpacking libgfortran3:amd64 (from .../libgfortran3_4.7.2-5_amd64.deb) ... Selecting previously unselected package libgmp10:amd64. Unpacking libgmp10:amd64 (from .../libgmp10_2%3a5.0.5+dfsg-2_amd64.deb) ... Selecting previously unselected package libltdl7:amd64. Unpacking libltdl7:amd64 (from .../libltdl7_2.4.2-1.1_amd64.deb) ... Selecting previously unselected package guile-1.8-libs. Unpacking guile-1.8-libs (from .../guile-1.8-libs_1.8.8+1-8_amd64.deb) ... Selecting previously unselected package libatlas3-base. Unpacking libatlas3-base (from .../libatlas3-base_3.8.4-9+deb7u1_amd64.deb) ... Selecting previously unselected package libctl3. Unpacking libctl3 (from .../libctl3_3.1.0-5_amd64.deb) ... Selecting previously unselected package libgsl0ldbl. Unpacking libgsl0ldbl (from .../libgsl0ldbl_1.15+dfsg.2-2_amd64.deb) ... Selecting previously unselected package libharminv2. Unpacking libharminv2 (from .../libharminv2_1.3.1-9_amd64.deb) ... Selecting previously unselected package libibverbs1. Unpacking libibverbs1 (from .../libibverbs1_1.1.6-1_amd64.deb) ... Selecting previously unselected package libnuma1. Unpacking libnuma1 (from .../libnuma1_2.0.8~rc4-1_amd64.deb) ... Selecting previously unselected package libtorque2. Unpacking libtorque2 (from .../libtorque2_2.4.16+dfsg-1+deb7u4_amd64.deb) ... Selecting previously unselected package libopenmpi1.3. Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.5-1_amd64.deb) ... Selecting previously unselected package libhdf5-openmpi-7. Unpacking libhdf5-openmpi-7 (from .../libhdf5-openmpi-7_1.8.8-9+b1_amd64.deb) ... Selecting previously unselected package libmeep-openmpi6. Unpacking libmeep-openmpi6 (from .../libmeep-openmpi6_1.1.1-9~deb7u2_amd64.deb) ... Selecting previously unselected package openmpi-common. Unpacking openmpi-common (from .../openmpi-common_1.4.5-1_all.deb) ... Selecting previously unselected package openmpi-bin. Unpacking openmpi-bin (from .../openmpi-bin_1.4.5-1_amd64.deb) ... Selecting previously unselected package meep-openmpi. Unpacking meep-openmpi (from .../meep-openmpi_1.1.1-9~deb7u2_amd64.deb) ... Setting up libgomp1:amd64 (4.7.2-5) ... Setting up libfftw3-3:amd64 (3.3.2-3.1) ... Setting up libquadmath0:amd64 (4.7.2-5) ... Setting up libgfortran3:amd64 (4.7.2-5) ... Setting up libgmp10:amd64 (2:5.0.5+dfsg-2) ... Setting up libltdl7:amd64 (2.4.2-1.1) ... Setting up guile-1.8-libs (1.8.8+1-8) ... Setting up libatlas3-base (3.8.4-9+deb7u1) ... update-alternatives: using /usr/lib/atlas-base/atlas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode update-alternatives: using /usr/lib/atlas-base/atlas/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libctl3 (3.1.0-5) ... Setting up libgsl0ldbl (1.15+dfsg.2-2) ... Setting up libharminv2 (1.3.1-9) ... Setting up libibverbs1 (1.1.6-1) ... Setting up libnuma1 (2.0.8~rc4-1) ... Setting up libtorque2 (2.4.16+dfsg-1+deb7u4) ... Setting up libopenmpi1.3 (1.4.5-1) ... Setting up libhdf5-openmpi-7 (1.8.8-9+b1) ... Setting up libmeep-openmpi6 (1.1.1-9~deb7u2) ... Setting up openmpi-common (1.4.5-1) ... Setting up openmpi-bin (1.4.5-1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up meep-openmpi (1.1.1-9~deb7u2) ... 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-get', '-y', 'install', 'meep-openmpi'] 0m9.1s INFO: Running scripts post_install 0m9.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_install_exceptions'] 0m9.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_install_exceptions'] 0m9.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8'] 0m9.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8'] 0m9.5s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpJJ4OR8 to wheezy-lts 0m9.5s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main deb http://security.debian.org wheezy/updates main 0m9.5s INFO: Running scripts pre_distupgrade 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_distupgrade_exceptions'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m9.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_distupgrade_wheezy'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_distupgrade_wheezy'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m9.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-get', 'update'] 0m11.7s DUMP: Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Get:1 http://security.debian.org wheezy/updates Release.gpg [1601 B] Get:2 http://security.debian.org wheezy/updates Release [52.3 kB] Get:3 http://security.debian.org wheezy/updates/main amd64 Packages [589 kB] Get:4 http://security.debian.org wheezy/updates/main Translation-en [338 kB] Fetched 981 kB in 0s (1009 kB/s) Reading package lists... 0m11.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-get', 'update'] 0m11.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-get', '-yf', 'dist-upgrade'] 0m16.3s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: bash gnupg gpgv libc-bin libc6 libdb5.1 libhdf5-openmpi-7 login multiarch-support passwd perl-base sensible-utils tar tzdata 14 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 16.8 MB of archives. After this operation, 665 kB of additional disk space will be used. Get:1 http://security.debian.org/ wheezy/updates/main bash amd64 4.2+dfsg-0.1+deb7u4 [1499 kB] Get:2 http://security.debian.org/ wheezy/updates/main login amd64 1:4.1.5.1-1+deb7u1 [984 kB] Get:3 http://security.debian.org/ wheezy/updates/main perl-base amd64 5.14.2-21+deb7u6 [1534 kB] Get:4 http://security.debian.org/ wheezy/updates/main tar amd64 1.26+dfsg-0.1+deb7u1 [984 kB] Get:5 http://security.debian.org/ wheezy/updates/main libc-bin amd64 2.13-38+deb7u12 [1275 kB] Get:6 http://security.debian.org/ wheezy/updates/main libc6 amd64 2.13-38+deb7u12 [4226 kB] Get:7 http://security.debian.org/ wheezy/updates/main libdb5.1 amd64 5.1.29-5+deb7u1 [723 kB] Get:8 http://security.debian.org/ wheezy/updates/main gpgv amd64 1.4.12-7+deb7u9 [229 kB] Get:9 http://security.debian.org/ wheezy/updates/main gnupg amd64 1.4.12-7+deb7u9 [1954 kB] Get:10 http://security.debian.org/ wheezy/updates/main passwd amd64 1:4.1.5.1-1+deb7u1 [1262 kB] Get:11 http://security.debian.org/ wheezy/updates/main sensible-utils all 0.0.7+deb7u1 [9000 B] Get:12 http://security.debian.org/ wheezy/updates/main tzdata all 2018e-0+deb7u1 [496 kB] Get:13 http://security.debian.org/ wheezy/updates/main multiarch-support amd64 2.13-38+deb7u12 [152 kB] Get:14 http://security.debian.org/ wheezy/updates/main libhdf5-openmpi-7 amd64 1.8.8-9+deb7u1 [1463 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.8 MB in 1s (12.1 MB/s) (Reading database ... 7373 files and directories currently installed.) Preparing to replace bash 4.2+dfsg-0.1+deb7u3 (using .../bash_4.2+dfsg-0.1+deb7u4_amd64.deb) ... Unpacking replacement bash ... Setting up bash (4.2+dfsg-0.1+deb7u4) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 7373 files and directories currently installed.) Preparing to replace login 1:4.1.5.1-1 (using .../login_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement login ... Setting up login (1:4.1.5.1-1+deb7u1) ... (Reading database ... 7373 files and directories currently installed.) Preparing to replace perl-base 5.14.2-21+deb7u3 (using .../perl-base_5.14.2-21+deb7u6_amd64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-21+deb7u6) ... (Reading database ... 7373 files and directories currently installed.) Preparing to replace tar 1.26+dfsg-0.1 (using .../tar_1.26+dfsg-0.1+deb7u1_amd64.deb) ... Unpacking replacement tar ... Setting up tar (1.26+dfsg-0.1+deb7u1) ... (Reading database ... 7373 files and directories currently installed.) Preparing to replace libc-bin 2.13-38+deb7u10 (using .../libc-bin_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-38+deb7u12) ... (Reading database ... 7373 files and directories currently installed.) Preparing to replace libc6:amd64 2.13-38+deb7u10 (using .../libc6_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc6:amd64 ... Setting up libc6:amd64 (2.13-38+deb7u12) ... (Reading database ... 7373 files and directories currently installed.) Preparing to replace libdb5.1:amd64 5.1.29-5 (using .../libdb5.1_5.1.29-5+deb7u1_amd64.deb) ... Unpacking replacement libdb5.1:amd64 ... Setting up libdb5.1:amd64 (5.1.29-5+deb7u1) ... (Reading database ... 7373 files and directories currently installed.) Preparing to replace gpgv 1.4.12-7+deb7u7 (using .../gpgv_1.4.12-7+deb7u9_amd64.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.12-7+deb7u9) ... (Reading database ... 7373 files and directories currently installed.) Preparing to replace gnupg 1.4.12-7+deb7u7 (using .../gnupg_1.4.12-7+deb7u9_amd64.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.12-7+deb7u9) ... (Reading database ... 7373 files and directories currently installed.) Preparing to replace passwd 1:4.1.5.1-1 (using .../passwd_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement passwd ... Setting up passwd (1:4.1.5.1-1+deb7u1) ... (Reading database ... 7373 files and directories currently installed.) Preparing to replace sensible-utils 0.0.7 (using .../sensible-utils_0.0.7+deb7u1_all.deb) ... Unpacking replacement sensible-utils ... Setting up sensible-utils (0.0.7+deb7u1) ... (Reading database ... 7373 files and directories currently installed.) Preparing to replace tzdata 2016d-0+deb7u1 (using .../tzdata_2018e-0+deb7u1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2018e-0+deb7u1) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Jun 28 23:15:50 UTC 2018. Universal Time is now: Thu Jun 28 23:15:50 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 7385 files and directories currently installed.) Preparing to replace multiarch-support 2.13-38+deb7u10 (using .../multiarch-support_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-38+deb7u12) ... (Reading database ... 7385 files and directories currently installed.) Preparing to replace libhdf5-openmpi-7 1.8.8-9+b1 (using .../libhdf5-openmpi-7_1.8.8-9+deb7u1_amd64.deb) ... Unpacking replacement libhdf5-openmpi-7 ... Setting up libhdf5-openmpi-7 (1.8.8-9+deb7u1) ... 0m16.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-get', '-yf', 'dist-upgrade'] 0m16.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.5s DUMP: c16ce146adddf40566e495d132dec083 - 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-cache', 'show', '--no-all-versions', 'meep-openmpi'] 0m16.5s DUMP: Package: meep-openmpi Version: 1.1.1-9~deb7u2 Installed-Size: 734 Maintainer: Thorsten Alteholz Architecture: amd64 Depends: guile-1.8-libs, libc6 (>= 2.2.5), libctl3 (>= 3.0.3), libfftw3-3, libgcc1 (>= 1:4.1.1), libgmp10, libgsl0ldbl (>= 1.9), libharminv2 (>= 1.3.1), libhdf5-openmpi-7 (>= 1.8.7), libltdl7 (>= 2.4.2), libmeep-openmpi6, libopenmpi1.3, libstdc++6 (>= 4.1.1), zlib1g (>= 1:1.1.4), openmpi-bin Description-en: software package for FDTD simulation, parallel (OpenMPI) version Meep (or MEEP) is a free finite-difference time-domain (FDTD) simulation software package developed at MIT to model electromagnetic systems. . Its features include: * Simulation in 1d, 2d, 3d, and cylindrical coordinates. * Distributed memory parallelism on any system supporting the MPI standard. * Dispersive (including loss/gain) and nonlinear (Kerr & Pockels) materials. Magnetic permeability and electric/magnetic conductivities. * PML absorbing boundaries and/or perfect conductor and/or Bloch-periodic boundary conditions. * Exploitation of symmetries to reduce the computation size . even/odd mirror symmetries and 90/180 degree rotations. * Complete scriptability - either via a Scheme scripting front-end (as in libctl and MPB), or callable as a C++ library. * Field output in the HDF5 standard scientific data format, supported by many visualization tools. * Arbitrary material and source distributions. * Field analyses including flux spectra, frequency extraction, and energy integrals; completely programmable. * Multi-parameter optimization, root-finding, integration, etcetera (via libctl). . This package contains the MPI version of the software. As opposed to meep-mpi this package also contains the OpenMPI version of libhdf5. Homepage: http://ab-initio.mit.edu/wiki/index.php/Meep Description-md5: 24998f4a608b80f56d14fc4fe5643bcc Section: science Priority: optional Filename: pool/main/m/meep-openmpi/meep-openmpi_1.1.1-9~deb7u2_amd64.deb Size: 301798 MD5sum: befbe78fbe47fe494ab81eeb34eba657 SHA1: c921de5a76c29a5c51bd7b1de76474b38f3afb5f SHA256: 2701399166c51a2aa50b3583305d8364be184a8ed9c1aa803caad8c5254235b4 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-cache', 'show', '--no-all-versions', 'meep-openmpi'] 0m16.5s INFO: apt-cache knows about the following packages: meep-openmpi 0m16.5s INFO: Running scripts pre_install 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_database-server'] 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_database-server'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_exceptions'] 0m16.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_exceptions'] 0m16.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_extras'] 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_extras'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_foreign_architecture'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-cache', 'policy'] 0m16.6s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main Translation-en 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-cache', 'policy'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-cache', 'policy', 'meep-openmpi'] 0m16.6s DUMP: meep-openmpi: Installed: 1.1.1-9~deb7u2 Candidate: 1.1.1-9~deb7u2 Version table: *** 1.1.1-9~deb7u2 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m16.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-cache', 'policy', 'meep-openmpi'] 0m16.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-get', '-y', 'install', 'meep-openmpi'] 0m16.8s DUMP: Reading package lists... Building dependency tree... Reading state information... meep-openmpi is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-get', '-y', 'install', 'meep-openmpi'] 0m16.8s INFO: Running scripts post_install 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_install_exceptions'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_install_exceptions'] 0m16.8s INFO: Running scripts post_distupgrade 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_distupgrade_exceptions'] 0m16.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_distupgrade_exceptions'] 0m16.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m16.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_distupgrade_zz_backports'] 0m16.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_distupgrade_zz_backports'] 0m16.9s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8'] 0m17.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8'] 0m17.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8'] 0m17.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8'] 0m17.7s INFO: Running scripts pre_install 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_database-server'] 0m17.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_database-server'] 0m17.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_exceptions'] 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_exceptions'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_extras'] 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_extras'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_foreign_architecture'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-cache', 'policy'] 0m17.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main Translation-en 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-cache', 'policy'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-cache', 'policy', 'meep-openmpi'] 0m17.8s DUMP: meep-openmpi: Installed: 1.1.1-9~deb7u2 Candidate: 1.1.1-9~deb7u2 Version table: *** 1.1.1-9~deb7u2 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m17.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-cache', 'policy', 'meep-openmpi'] 0m17.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-get', '-y', 'install', 'meep-openmpi=1.1.1-9~deb7u2'] 0m18.0s DUMP: Reading package lists... Building dependency tree... Reading state information... meep-openmpi is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-get', '-y', 'install', 'meep-openmpi=1.1.1-9~deb7u2'] 0m18.0s INFO: Running scripts post_install 0m18.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_install_exceptions'] 0m18.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_install_exceptions'] 0m18.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8'] 0m18.5s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8'] 0m18.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m18.5s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u4 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u9 install ok installed gpgv gpgv 1.4.12-7+deb7u9 install ok installed grep grep 2.12-2 install ok installed guile-1.8-libs guile-1.8-libs 1.8.8+1-8 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libatlas3-base libatlas3-base 3.8.4-9+deb7u1 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u12 install ok installed libc6:amd64 libc6 2.13-38+deb7u12 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libctl3 libctl3 3.1.0-5 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5+deb7u1 install ok installed libfftw3-3:amd64 libfftw3-3 3.3.2-3.1 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed libgfortran3:amd64 libgfortran3 4.7.2-5 install ok installed libgmp10:amd64 libgmp10 2:5.0.5+dfsg-2 install ok installed libgomp1:amd64 libgomp1 4.7.2-5 install ok installed libgsl0ldbl libgsl0ldbl 1.15+dfsg.2-2 install ok installed libharminv2 libharminv2 1.3.1-9 install ok installed libhdf5-openmpi-7 libhdf5-openmpi-7 1.8.8-9+deb7u1 install ok installed libibverbs1 libibverbs1 1.1.6-1 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed libltdl7:amd64 libltdl7 2.4.2-1.1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmeep-openmpi6 libmeep-openmpi6 1.1.1-9~deb7u2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libnuma1 libnuma1 2.0.8~rc4-1 install ok installed libopenmpi1.3 libopenmpi1.3 1.4.5-1 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libquadmath0:amd64 libquadmath0 4.7.2-5 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libtorque2 libtorque2 2.4.16+dfsg-1+deb7u4 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1+deb7u1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed meep-openmpi meep-openmpi 1.1.1-9~deb7u2 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u12 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed openmpi-bin openmpi-bin 1.4.5-1 install ok installed openmpi-common openmpi-common 1.4.5-1 install ok installed passwd passwd 1:4.1.5.1-1+deb7u1 install ok installed perl-base perl-base 5.14.2-21+deb7u6 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7+deb7u1 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1+deb7u1 install ok installed tzdata tzdata 2018e-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m18.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m19.0s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', '-ac', '--ignore-obsolete'] 0m19.6s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', '-ac', '--ignore-obsolete'] 0m19.6s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m19.6s DUMP: 0.15.1 0m19.6s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m19.6s INFO: Running adequate version 0.15.1 now. 0m19.6s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'meep-openmpi'] 0m19.7s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'meep-openmpi'] 0m19.7s INFO: Running scripts pre_remove 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m19.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m19.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m20.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m20.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_remove_exceptions'] 0m20.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/pre_remove_exceptions'] 0m20.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-get', 'remove', 'libctl3', 'libibverbs1', 'libharminv2', 'libopenmpi1.3', 'openmpi-bin', 'libltdl7:amd64', 'libfftw3-3:amd64', 'libgmp10:amd64', 'openmpi-common', 'libquadmath0:amd64', 'libgomp1:amd64', 'libtorque2', 'libnuma1', 'libmeep-openmpi6', 'libgsl0ldbl', 'guile-1.8-libs', 'libhdf5-openmpi-7', 'libgfortran3:amd64', 'libatlas3-base', 'meep-openmpi'] 0m21.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: guile-1.8-libs libatlas3-base libctl3 libfftw3-3 libgfortran3 libgmp10 libgomp1 libgsl0ldbl libharminv2 libhdf5-openmpi-7 libibverbs1 libltdl7 libmeep-openmpi6 libnuma1 libopenmpi1.3 libquadmath0 libtorque2 meep-openmpi openmpi-bin openmpi-common 0 upgraded, 0 newly installed, 20 to remove and 0 not upgraded. After this operation, 43.9 MB disk space will be freed. (Reading database ... 7385 files and directories currently installed.) Removing meep-openmpi ... Removing libctl3 ... Removing guile-1.8-libs ... Removing libmeep-openmpi6 ... Removing libharminv2 ... Removing libatlas3-base ... Removing libfftw3-3:amd64 ... Removing libhdf5-openmpi-7 ... Removing openmpi-bin ... Removing libopenmpi1.3 ... Removing libgfortran3:amd64 ... Removing libgmp10:amd64 ... Removing libgomp1:amd64 ... Removing libgsl0ldbl ... Removing libibverbs1 ... Removing libltdl7:amd64 ... Removing libnuma1 ... Removing libquadmath0:amd64 ... Removing libtorque2 ... Removing openmpi-common ... 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-get', 'remove', 'libctl3', 'libibverbs1', 'libharminv2', 'libopenmpi1.3', 'openmpi-bin', 'libltdl7:amd64', 'libfftw3-3:amd64', 'libgmp10:amd64', 'openmpi-common', 'libquadmath0:amd64', 'libgomp1:amd64', 'libtorque2', 'libnuma1', 'libmeep-openmpi6', 'libgsl0ldbl', 'guile-1.8-libs', 'libhdf5-openmpi-7', 'libgfortran3:amd64', 'libatlas3-base', 'meep-openmpi'] 0m21.6s INFO: Running scripts post_remove 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_remove_exceptions'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_remove_exceptions'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'dpkg', '--purge', 'libctl3', 'libibverbs1', 'libharminv2', 'libopenmpi1.3', 'openmpi-bin', 'libltdl7:amd64', 'libfftw3-3:amd64', 'libgmp10:amd64', 'openmpi-common', 'libquadmath0:amd64', 'libgomp1:amd64', 'libtorque2', 'libnuma1', 'libmeep-openmpi6', 'libgsl0ldbl', 'guile-1.8-libs', 'libhdf5-openmpi-7', 'libgfortran3:amd64', 'libatlas3-base'] 0m21.7s DUMP: (Reading database ... 6784 files and directories currently installed.) Removing libctl3 ... Purging configuration files for libctl3 ... Removing libibverbs1 ... Purging configuration files for libibverbs1 ... Removing libharminv2 ... Purging configuration files for libharminv2 ... Removing libopenmpi1.3 ... Purging configuration files for libopenmpi1.3 ... Removing openmpi-bin ... Purging configuration files for openmpi-bin ... Removing libltdl7:amd64 ... Purging configuration files for libltdl7:amd64 ... Removing libfftw3-3:amd64 ... Purging configuration files for libfftw3-3:amd64 ... Removing libgmp10:amd64 ... Purging configuration files for libgmp10:amd64 ... dpkg: warning: ignoring request to remove openmpi-common which isn't installed Removing libquadmath0:amd64 ... Purging configuration files for libquadmath0:amd64 ... Removing libgomp1:amd64 ... Purging configuration files for libgomp1:amd64 ... Removing libtorque2 ... Purging configuration files for libtorque2 ... Removing libnuma1 ... Purging configuration files for libnuma1 ... Removing libmeep-openmpi6 ... Purging configuration files for libmeep-openmpi6 ... Removing libgsl0ldbl ... Purging configuration files for libgsl0ldbl ... Removing guile-1.8-libs ... Purging configuration files for guile-1.8-libs ... Removing libhdf5-openmpi-7 ... Purging configuration files for libhdf5-openmpi-7 ... Removing libgfortran3:amd64 ... Purging configuration files for libgfortran3:amd64 ... Removing libatlas3-base ... Purging configuration files for libatlas3-base ... 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'dpkg', '--purge', 'libctl3', 'libibverbs1', 'libharminv2', 'libopenmpi1.3', 'openmpi-bin', 'libltdl7:amd64', 'libfftw3-3:amd64', 'libgmp10:amd64', 'openmpi-common', 'libquadmath0:amd64', 'libgomp1:amd64', 'libtorque2', 'libnuma1', 'libmeep-openmpi6', 'libgsl0ldbl', 'guile-1.8-libs', 'libhdf5-openmpi-7', 'libgfortran3:amd64', 'libatlas3-base'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'dpkg', '--purge', 'meep-openmpi'] 0m21.7s DUMP: dpkg: warning: ignoring request to remove meep-openmpi which isn't installed 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'dpkg', '--purge', 'meep-openmpi'] 0m21.7s INFO: Running scripts post_purge 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_purge_exceptions'] 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_purge_exceptions'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'dpkg', '--purge', '--pending'] 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'dpkg', '--purge', '--pending'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'dpkg', '--remove', '--pending'] 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'dpkg', '--remove', '--pending'] 0m21.8s INFO: Running scripts post_test 0m21.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_test_exceptions'] 0m21.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'tmp/scripts/post_test_exceptions'] 0m21.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8'] 0m22.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'dpkg-divert', '--list'] 0m22.3s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m22.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'dpkg-divert', '--list'] 0m22.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-get', 'clean'] 0m22.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8', 'apt-get', 'clean'] 0m22.4s DEBUG: Recording chroot state 0m24.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/run/shm'] 0m24.0s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/run/shm'] 0m24.0s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/dev/console'] 0m24.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/dev/console'] 0m24.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/dev/ptmx'] 0m24.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/dev/ptmx'] 0m24.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/dev/pts'] 0m24.1s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/dev/pts'] 0m24.1s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/proc'] 0m24.2s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8/proc'] 0m24.2s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8'] 0m24.3s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpJJ4OR8'] 0m24.3s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpJJ4OR8 0m24.3s INFO: PASS: Upgrading between Debian distributions. 0m24.3s INFO: PASS: All tests. 0m24.3s INFO: piuparts run ends. ret=0 End: 2018-06-28 23:15:58 UTC