Start: 2018-02-03 20:59:08 UTC [wheezy] Package: petsc-dev Source: petsc Version: 3.2.dfsg-6 Installed-Size: 47 Maintainer: Debian Science Maintainers Architecture: all Depends: libpetsc3.2-dev Suggests: petsc-dbg Description: Virtual package depending on latest PETSc development package Homepage: http://www.mcs.anl.gov/petsc Description-md5: b60e8f7f27286538faa45cfba0ce198b Tag: devel::library, role::dummy, role::metapackage Section: libdevel Priority: extra Filename: pool/main/p/petsc/petsc-dev_3.2.dfsg-6_all.deb Size: 15510 MD5sum: b0a0a6bb98dc3aa1cd232cf2d2a67b39 SHA1: c935fa9b8caa73dffe5f956b4a3b7717927d1be5 SHA256: c7ac6b4609ac8b5ec112d6337c79a8df9494ef575be8f903e65513b442ec17ac [wheezy-lts] Package: petsc-dev Source: petsc Version: 3.2.dfsg-6 Installed-Size: 47 Maintainer: Debian Science Maintainers Architecture: all Depends: libpetsc3.2-dev Suggests: petsc-dbg Description: Virtual package depending on latest PETSc development package Homepage: http://www.mcs.anl.gov/petsc Description-md5: b60e8f7f27286538faa45cfba0ce198b Tag: devel::library, role::dummy, role::metapackage Section: libdevel Priority: extra Filename: pool/main/p/petsc/petsc-dev_3.2.dfsg-6_all.deb Size: 15510 MD5sum: b0a0a6bb98dc3aa1cd232cf2d2a67b39 SHA1: c935fa9b8caa73dffe5f956b4a3b7717927d1be5 SHA256: c7ac6b4609ac8b5ec112d6337c79a8df9494ef575be8f903e65513b442ec17ac Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d wheezy-lts -B reference-chroot-metadata.dat --apt petsc-dev=3.2.dfsg-6 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.84~201801121524~0.83-4-g6e16ed9a starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d wheezy-lts -B reference-chroot-metadata.dat --apt petsc-dev=3.2.dfsg-6 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-5-amd64 #1 SMP Debian 4.9.65-3+deb9u2 (2018-01-04) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmp5kuEip 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmp5kuEip 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp5kuEip', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.8s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmp5kuEip', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp5kuEip/proc'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmp5kuEip/proc'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp5kuEip/dev/pts'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmp5kuEip/dev/pts'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp5kuEip/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp5kuEip/dev/ptmx'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmp5kuEip/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmp5kuEip/dev/ptmx'] 0m1.8s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp5kuEip/dev/console'] 0m1.8s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/3', '/srv/piuparts.debian.org/tmp/tmp5kuEip/dev/console'] 0m1.8s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp5kuEip/run/shm'] 0m1.8s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmp5kuEip/run/shm'] 0m1.8s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main 0m1.8s DEBUG: Created policy-rc.d and chmodded it. 0m1.8s DEBUG: Created resolv.conf. 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmp5kuEip/tmp/scripts/ 0m1.8s DEBUG: Copying scriptsdir /etc/piuparts/scripts-wheezy to /srv/piuparts.debian.org/tmp/tmp5kuEip/tmp/scripts/ 0m1.8s INFO: Running scripts post_chroot_unpack 0m1.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-get', 'update'] 0m3.7s DUMP: Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Reading package lists... 0m3.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-get', 'update'] 0m3.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-get', '-yf', 'dist-upgrade'] 0m3.9s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-get', '-yf', 'dist-upgrade'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.1s DUMP: 0c96df6df725ee7ec7aebd2b6a77fb72 - 0m4.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m4.1s INFO: Running scripts post_setup 0m4.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_setup_dummy_users'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_setup_dummy_users'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_setup_forbid_home'] 0m5.1s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_setup_forbid_home'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.1s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_setup_force-unsafe-io'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_setup_minimize'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_setup_minimize'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_setup_squeeze-backports'] 0m5.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m5.9s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 335 kB of archives. After this operation, 1327 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 335 kB in 0s (24.5 MB/s) Selecting previously unselected package adduser. (Reading database ... 6639 files and directories currently installed.) Unpacking adduser (from .../adduser_3.113+nmu3_all.deb) ... Selecting previously unselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ... Moving old data out of the way Setting up adduser (3.113+nmu3) ... Setting up ucf (3.0025+nmu3) ... 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_setup_zz_backports'] 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_setup_zz_backports'] 0m5.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.9s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m5.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m5.9s DEBUG: Loading chroot meta data from reference-chroot-metadata.dat 0m6.4s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5kuEip'] 0m7.1s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5kuEip'] 0m7.1s INFO: Running scripts is_testable 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/is_testable_uninstallable'] 0m7.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/is_testable_uninstallable'] 0m7.1s INFO: Running scripts pre_test 0m7.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_test_exceptions'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_test_exceptions'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_test_root_password'] 0m7.2s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_test_root_password'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-cache', 'show', 'petsc-dev'] 0m7.2s DUMP: Package: petsc-dev Source: petsc Version: 3.2.dfsg-6 Installed-Size: 47 Maintainer: Debian Science Maintainers Architecture: all Depends: libpetsc3.2-dev Suggests: petsc-dbg Description-en: Virtual package depending on latest PETSc development package This metapackage will always depend on the most recent version of petscX-dev (X=version), so if you install it then you will get upgrades automatically. Homepage: http://www.mcs.anl.gov/petsc Description-md5: b60e8f7f27286538faa45cfba0ce198b Tag: devel::library, role::dummy, role::metapackage Section: libdevel Priority: extra Filename: pool/main/p/petsc/petsc-dev_3.2.dfsg-6_all.deb Size: 15510 MD5sum: b0a0a6bb98dc3aa1cd232cf2d2a67b39 SHA1: c935fa9b8caa73dffe5f956b4a3b7717927d1be5 SHA256: c7ac6b4609ac8b5ec112d6337c79a8df9494ef575be8f903e65513b442ec17ac 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-cache', 'show', 'petsc-dev'] 0m7.2s INFO: apt-cache knows about the following packages: petsc-dev 0m7.2s INFO: Running scripts pre_install 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_database-server'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_database-server'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_exceptions'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_exceptions'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_extras'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_extras'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_foreign_architecture'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m7.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-cache', 'policy'] 0m7.3s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-cache', 'policy'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-cache', 'policy', 'petsc-dev'] 0m7.3s DUMP: petsc-dev: Installed: (none) Candidate: 3.2.dfsg-6 Version table: 3.2.dfsg-6 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 0m7.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-cache', 'policy', 'petsc-dev'] 0m7.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-get', '-y', 'install', 'petsc-dev'] 0m17.6s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: binutils cpp cpp-4.7 g++ g++-4.7 gcc gcc-4.7 gfortran gfortran-4.7 hdf5-helpers libamd2.2.0 libblacs-mpi-dev libblacs-mpi1 libblas-dev libblas3 libbtf1.1.0 libc-dev-bin libc6-dev libcamd2.2.0 libccolamd2.7.1 libcholmod1.7.1 libcolamd2.7.1 libcsparse2.2.3 libcxsparse2.2.3 libgfortran3 libgmp10 libgomp1 libhdf5-mpi-dev libhdf5-openmpi-7 libhdf5-openmpi-dev libhypre-2.8.0b libhypre-dev libibverbs-dev libibverbs1 libitm1 libjpeg8 libjpeg8-dev libklu1.1.0 liblapack-dev liblapack3 libldl2.0.1 libmpc2 libmpfr4 libmumps-4.10.0 libmumps-dev libnuma1 libopenmpi-dev libopenmpi1.3 libpetsc3.2 libpetsc3.2-dev libpthread-stubs0 libpthread-stubs0-dev libptscotch-5.1 libptscotch-dev libquadmath0 libscalapack-mpi-dev libscalapack-mpi1 libscotch-5.1 libscotch-dev libspooles-dev libspooles2.2 libstdc++6-4.7-dev libsuitesparse-dev libsuperlu3 libsuperlu3-dev libtorque2 libumfpack5.4.0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 linux-libc-dev mpi-default-bin mpi-default-dev openmpi-bin openmpi-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: binutils-doc cpp-doc gcc-4.7-locales g++-multilib g++-4.7-multilib gcc-4.7-doc libstdc++6-4.7-dbg gcc-multilib make manpages-dev autoconf automake1.9 libtool flex bison gdb gcc-doc gcc-4.7-multilib libmudflap0-4.7-dev libgcc1-dbg libgomp1-dbg libitm1-dbg libquadmath0-dbg libmudflap0-dbg libcloog-ppl0 libppl-c2 libppl7 binutils-gold gfortran-multilib gfortran-doc gfortran-4.7-multilib gfortran-4.7-doc libgfortran3-dbg glibc-doc libhdf5-doc libpetsc3.2-dbg petsc3.2-doc libluminate-dev scalapack-doc spooles-doc libstdc++6-4.7-doc libxcb-doc petsc-dbg Recommended packages: libx11-doc openmpi-checkpoint The following NEW packages will be installed: binutils cpp cpp-4.7 g++ g++-4.7 gcc gcc-4.7 gfortran gfortran-4.7 hdf5-helpers libamd2.2.0 libblacs-mpi-dev libblacs-mpi1 libblas-dev libblas3 libbtf1.1.0 libc-dev-bin libc6-dev libcamd2.2.0 libccolamd2.7.1 libcholmod1.7.1 libcolamd2.7.1 libcsparse2.2.3 libcxsparse2.2.3 libgfortran3 libgmp10 libgomp1 libhdf5-mpi-dev libhdf5-openmpi-7 libhdf5-openmpi-dev libhypre-2.8.0b libhypre-dev libibverbs-dev libibverbs1 libitm1 libjpeg8 libjpeg8-dev libklu1.1.0 liblapack-dev liblapack3 libldl2.0.1 libmpc2 libmpfr4 libmumps-4.10.0 libmumps-dev libnuma1 libopenmpi-dev libopenmpi1.3 libpetsc3.2 libpetsc3.2-dev libpthread-stubs0 libpthread-stubs0-dev libptscotch-5.1 libptscotch-dev libquadmath0 libscalapack-mpi-dev libscalapack-mpi1 libscotch-5.1 libscotch-dev libspooles-dev libspooles2.2 libstdc++6-4.7-dev libsuitesparse-dev libsuperlu3 libsuperlu3-dev libtorque2 libumfpack5.4.0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 linux-libc-dev mpi-default-bin mpi-default-dev openmpi-bin openmpi-common petsc-dev x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 88 newly installed, 0 to remove and 0 not upgraded. Need to get 95.3 MB of archives. After this operation, 306 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main libquadmath0 amd64 4.7.2-5 [125 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main libgfortran3 amd64 4.7.2-5 [351 kB] Get:3 http://mirror-ubc.debian.org/debian/ wheezy/main libgmp10 amd64 2:5.0.5+dfsg-2 [250 kB] Get:4 http://mirror-ubc.debian.org/debian/ wheezy/main libgomp1 amd64 4.7.2-5 [27.5 kB] Get:5 http://mirror-ubc.debian.org/debian/ wheezy/main libitm1 amd64 4.7.2-5 [36.6 kB] Get:6 http://mirror-ubc.debian.org/debian/ wheezy/main libjpeg8 amd64 8d-1+deb7u1 [138 kB] Get:7 http://mirror-ubc.debian.org/debian/ wheezy/main libmpfr4 amd64 3.1.0-5 [538 kB] Get:8 http://mirror-ubc.debian.org/debian/ wheezy/main libxau6 amd64 1:1.0.7-1 [18.8 kB] Get:9 http://mirror-ubc.debian.org/debian/ wheezy/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB] Get:10 http://mirror-ubc.debian.org/debian/ wheezy/main libxcb1 amd64 1.8.1-2+deb7u1 [50.2 kB] Get:11 http://mirror-ubc.debian.org/debian/ wheezy/main libx11-data all 2:1.5.0-1+deb7u2 [194 kB] Get:12 http://mirror-ubc.debian.org/debian/ wheezy/main libx11-6 amd64 2:1.5.0-1+deb7u2 [901 kB] Get:13 http://mirror-ubc.debian.org/debian/ wheezy/main libmpc2 amd64 0.9-4 [40.1 kB] Get:14 http://mirror-ubc.debian.org/debian/ wheezy/main binutils amd64 2.22-8+deb7u2 [4793 kB] Get:15 http://mirror-ubc.debian.org/debian/ wheezy/main cpp-4.7 amd64 4.7.2-5 [5416 kB] Get:16 http://mirror-ubc.debian.org/debian/ wheezy/main cpp amd64 4:4.7.2-1 [16.6 kB] Get:17 http://mirror-ubc.debian.org/debian/ wheezy/main gcc-4.7 amd64 4.7.2-5 [8296 kB] Get:18 http://mirror-ubc.debian.org/debian/ wheezy/main gcc amd64 4:4.7.2-1 [5064 B] Get:19 http://mirror-ubc.debian.org/debian/ wheezy/main libc-dev-bin amd64 2.13-38+deb7u10 [228 kB] Get:20 http://mirror-ubc.debian.org/debian/ wheezy/main linux-libc-dev amd64 3.2.78-1 [854 kB] Get:21 http://mirror-ubc.debian.org/debian/ wheezy/main libc6-dev amd64 2.13-38+deb7u10 [2663 kB] Get:22 http://mirror-ubc.debian.org/debian/ wheezy/main libstdc++6-4.7-dev amd64 4.7.2-5 [1726 kB] Get:23 http://mirror-ubc.debian.org/debian/ wheezy/main g++-4.7 amd64 4.7.2-5 [8011 kB] Get:24 http://mirror-ubc.debian.org/debian/ wheezy/main g++ amd64 4:4.7.2-1 [1374 B] Get:25 http://mirror-ubc.debian.org/debian/ wheezy/main gfortran-4.7 amd64 4.7.2-5 [6173 kB] Get:26 http://mirror-ubc.debian.org/debian/ wheezy/main gfortran amd64 4:4.7.2-1 [1130 B] Get:27 http://mirror-ubc.debian.org/debian/ wheezy/main hdf5-helpers amd64 1.8.8-9+b1 [32.6 kB] Get:28 http://mirror-ubc.debian.org/debian/ wheezy/main libamd2.2.0 amd64 1:3.4.0-3 [29.2 kB] Get:29 http://mirror-ubc.debian.org/debian/ wheezy/main libblas3 amd64 1.2.20110419-5 [293 kB] Get:30 http://mirror-ubc.debian.org/debian/ wheezy/main libblas-dev amd64 1.2.20110419-5 [312 kB] Get:31 http://mirror-ubc.debian.org/debian/ wheezy/main libbtf1.1.0 amd64 1:3.4.0-3 [13.5 kB] Get:32 http://mirror-ubc.debian.org/debian/ wheezy/main libcamd2.2.0 amd64 1:3.4.0-3 [28.5 kB] Get:33 http://mirror-ubc.debian.org/debian/ wheezy/main libccolamd2.7.1 amd64 1:3.4.0-3 [30.5 kB] Get:34 http://mirror-ubc.debian.org/debian/ wheezy/main libcolamd2.7.1 amd64 1:3.4.0-3 [22.5 kB] Get:35 http://mirror-ubc.debian.org/debian/ wheezy/main liblapack3 amd64 3.4.1+dfsg-1+deb70u1 [5036 kB] Get:36 http://mirror-ubc.debian.org/debian/ wheezy/main libcholmod1.7.1 amd64 1:3.4.0-3 [409 kB] Get:37 http://mirror-ubc.debian.org/debian/ wheezy/main libcsparse2.2.3 amd64 1:3.4.0-3 [36.7 kB] Get:38 http://mirror-ubc.debian.org/debian/ wheezy/main libcxsparse2.2.3 amd64 1:3.4.0-3 [112 kB] Get:39 http://mirror-ubc.debian.org/debian/ wheezy/main libjpeg8-dev amd64 8d-1+deb7u1 [245 kB] Get:40 http://mirror-ubc.debian.org/debian/ wheezy/main libklu1.1.0 amd64 1:3.4.0-3 [107 kB] Get:41 http://mirror-ubc.debian.org/debian/ wheezy/main liblapack-dev amd64 3.4.1+dfsg-1+deb70u1 [5548 kB] Get:42 http://mirror-ubc.debian.org/debian/ wheezy/main libldl2.0.1 amd64 1:3.4.0-3 [12.9 kB] Get:43 http://mirror-ubc.debian.org/debian/ wheezy/main libnuma1 amd64 2.0.8~rc4-1 [33.7 kB] Get:44 http://mirror-ubc.debian.org/debian/ wheezy/main libpthread-stubs0 amd64 0.3-3 [3228 B] Get:45 http://mirror-ubc.debian.org/debian/ wheezy/main libpthread-stubs0-dev amd64 0.3-3 [3998 B] Get:46 http://mirror-ubc.debian.org/debian/ wheezy/main libumfpack5.4.0 amd64 1:3.4.0-3 [360 kB] Get:47 http://mirror-ubc.debian.org/debian/ wheezy/main libsuitesparse-dev amd64 1:3.4.0-3 [1506 kB] Get:48 http://mirror-ubc.debian.org/debian/ wheezy/main libsuperlu3 amd64 3.0+20070106-3 [170 kB] Get:49 http://mirror-ubc.debian.org/debian/ wheezy/main libsuperlu3-dev amd64 3.0+20070106-3 [573 kB] Get:50 http://mirror-ubc.debian.org/debian/ wheezy/main libtorque2 amd64 2.4.16+dfsg-1+deb7u4 [121 kB] Get:51 http://mirror-ubc.debian.org/debian/ wheezy/main xorg-sgml-doctools all 1:1.10-1 [24.1 kB] Get:52 http://mirror-ubc.debian.org/debian/ wheezy/main x11proto-core-dev all 7.0.23-1 [774 kB] Get:53 http://mirror-ubc.debian.org/debian/ wheezy/main libxau-dev amd64 1:1.0.7-1 [21.7 kB] Get:54 http://mirror-ubc.debian.org/debian/ wheezy/main libxdmcp-dev amd64 1:1.1.1-1 [42.3 kB] Get:55 http://mirror-ubc.debian.org/debian/ wheezy/main x11proto-input-dev all 2.2-1 [172 kB] Get:56 http://mirror-ubc.debian.org/debian/ wheezy/main x11proto-kb-dev all 1.0.6-2 [269 kB] Get:57 http://mirror-ubc.debian.org/debian/ wheezy/main xtrans-dev all 1.2.7-1 [112 kB] Get:58 http://mirror-ubc.debian.org/debian/ wheezy/main libxcb1-dev amd64 1.8.1-2+deb7u1 [88.2 kB] Get:59 http://mirror-ubc.debian.org/debian/ wheezy/main libx11-dev amd64 2:1.5.0-1+deb7u2 [1038 kB] Get:60 http://mirror-ubc.debian.org/debian/ wheezy/main zlib1g-dev amd64 1:1.2.7.dfsg-13 [215 kB] Get:61 http://mirror-ubc.debian.org/debian/ wheezy/main libibverbs1 amd64 1.1.6-1 [35.3 kB] Get:62 http://mirror-ubc.debian.org/debian/ wheezy/main libopenmpi1.3 amd64 1.4.5-1 [1436 kB] Get:63 http://mirror-ubc.debian.org/debian/ wheezy/main openmpi-common all 1.4.5-1 [101 kB] Get:64 http://mirror-ubc.debian.org/debian/ wheezy/main openmpi-bin amd64 1.4.5-1 [166 kB] Get:65 http://mirror-ubc.debian.org/debian/ wheezy/main mpi-default-bin amd64 1.0.1 [2990 B] Get:66 http://mirror-ubc.debian.org/debian/ wheezy/main libblacs-mpi1 amd64 1.1-31 [68.4 kB] Get:67 http://mirror-ubc.debian.org/debian/ wheezy/main libibverbs-dev amd64 1.1.6-1 [84.8 kB] Get:68 http://mirror-ubc.debian.org/debian/ wheezy/main libopenmpi-dev amd64 1.4.5-1 [2778 kB] Get:69 http://mirror-ubc.debian.org/debian/ wheezy/main mpi-default-dev amd64 1.0.1 [3604 B] Get:70 http://mirror-ubc.debian.org/debian/ wheezy/main libblacs-mpi-dev amd64 1.1-31 [76.5 kB] Get:71 http://mirror-ubc.debian.org/debian/ wheezy/main libhdf5-openmpi-7 amd64 1.8.8-9+b1 [1463 kB] Get:72 http://mirror-ubc.debian.org/debian/ wheezy/main libhdf5-openmpi-dev amd64 1.8.8-9+b1 [2572 kB] Get:73 http://mirror-ubc.debian.org/debian/ wheezy/main libhdf5-mpi-dev amd64 1.8.8-9+b1 [24.4 kB] Get:74 http://mirror-ubc.debian.org/debian/ wheezy/main libhypre-2.8.0b amd64 2.8.0b-1 [1778 kB] Get:75 http://mirror-ubc.debian.org/debian/ wheezy/main libhypre-dev all 2.8.0b-1 [171 kB] Get:76 http://mirror-ubc.debian.org/debian/ wheezy/main libscalapack-mpi1 amd64 1.8.0-9 [3201 kB] Get:77 http://mirror-ubc.debian.org/debian/ wheezy/main libmumps-4.10.0 amd64 4.10.0.dfsg-3 [2109 kB] Get:78 http://mirror-ubc.debian.org/debian/ wheezy/main libscalapack-mpi-dev amd64 1.8.0-9 [3548 kB] Get:79 http://mirror-ubc.debian.org/debian/ wheezy/main libmumps-dev amd64 4.10.0.dfsg-3 [2251 kB] Get:80 http://mirror-ubc.debian.org/debian/ wheezy/main libscotch-5.1 amd64 5.1.12b.dfsg-1.2+b1 [807 kB] Get:81 http://mirror-ubc.debian.org/debian/ wheezy/main libptscotch-5.1 amd64 5.1.12b.dfsg-1.2+b1 [1297 kB] Get:82 http://mirror-ubc.debian.org/debian/ wheezy/main libspooles2.2 amd64 2.2-9 [556 kB] Get:83 http://mirror-ubc.debian.org/debian/ wheezy/main libpetsc3.2 amd64 3.2.dfsg-6 [2775 kB] Get:84 http://mirror-ubc.debian.org/debian/ wheezy/main libspooles-dev amd64 2.2-9 [791 kB] Get:85 http://mirror-ubc.debian.org/debian/ wheezy/main libscotch-dev amd64 5.1.12b.dfsg-1.2+b1 [989 kB] Get:86 http://mirror-ubc.debian.org/debian/ wheezy/main libptscotch-dev amd64 5.1.12b.dfsg-1.2+b1 [1614 kB] Get:87 http://mirror-ubc.debian.org/debian/ wheezy/main libpetsc3.2-dev amd64 3.2.dfsg-6 [5878 kB] Get:88 http://mirror-ubc.debian.org/debian/ wheezy/main petsc-dev all 3.2.dfsg-6 [15.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 95.3 MB in 3s (29.5 MB/s) Selecting previously unselected package libquadmath0:amd64. (Reading database ... 6768 files and directories currently installed.) Unpacking libquadmath0:amd64 (from .../libquadmath0_4.7.2-5_amd64.deb) ... Selecting previously unselected package libgfortran3:amd64. Unpacking libgfortran3:amd64 (from .../libgfortran3_4.7.2-5_amd64.deb) ... Selecting previously unselected package libgmp10:amd64. Unpacking libgmp10:amd64 (from .../libgmp10_2%3a5.0.5+dfsg-2_amd64.deb) ... Selecting previously unselected package libgomp1:amd64. Unpacking libgomp1:amd64 (from .../libgomp1_4.7.2-5_amd64.deb) ... Selecting previously unselected package libitm1:amd64. Unpacking libitm1:amd64 (from .../libitm1_4.7.2-5_amd64.deb) ... Selecting previously unselected package libjpeg8:amd64. Unpacking libjpeg8:amd64 (from .../libjpeg8_8d-1+deb7u1_amd64.deb) ... Selecting previously unselected package libmpfr4:amd64. Unpacking libmpfr4:amd64 (from .../libmpfr4_3.1.0-5_amd64.deb) ... Selecting previously unselected package libxau6:amd64. 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Selecting previously unselected package cpp. Unpacking cpp (from .../cpp_4%3a4.7.2-1_amd64.deb) ... Selecting previously unselected package gcc-4.7. Unpacking gcc-4.7 (from .../gcc-4.7_4.7.2-5_amd64.deb) ... Selecting previously unselected package gcc. Unpacking gcc (from .../gcc_4%3a4.7.2-1_amd64.deb) ... Selecting previously unselected package libc-dev-bin. Unpacking libc-dev-bin (from .../libc-dev-bin_2.13-38+deb7u10_amd64.deb) ... Selecting previously unselected package linux-libc-dev:amd64. Unpacking linux-libc-dev:amd64 (from .../linux-libc-dev_3.2.78-1_amd64.deb) ... Selecting previously unselected package libc6-dev:amd64. Unpacking libc6-dev:amd64 (from .../libc6-dev_2.13-38+deb7u10_amd64.deb) ... Selecting previously unselected package libstdc++6-4.7-dev. Unpacking libstdc++6-4.7-dev (from .../libstdc++6-4.7-dev_4.7.2-5_amd64.deb) ... Selecting previously unselected package g++-4.7. Unpacking g++-4.7 (from .../g++-4.7_4.7.2-5_amd64.deb) ... Selecting previously unselected package g++. Unpacking g++ (from .../g++_4%3a4.7.2-1_amd64.deb) ... Selecting previously unselected package gfortran-4.7. Unpacking gfortran-4.7 (from .../gfortran-4.7_4.7.2-5_amd64.deb) ... Selecting previously unselected package gfortran. Unpacking gfortran (from .../gfortran_4%3a4.7.2-1_amd64.deb) ... Selecting previously unselected package hdf5-helpers. Unpacking hdf5-helpers (from .../hdf5-helpers_1.8.8-9+b1_amd64.deb) ... Selecting previously unselected package libamd2.2.0. Unpacking libamd2.2.0 (from .../libamd2.2.0_1%3a3.4.0-3_amd64.deb) ... Selecting previously unselected package libblas3. Unpacking libblas3 (from .../libblas3_1.2.20110419-5_amd64.deb) ... Selecting previously unselected package libblas-dev. Unpacking libblas-dev (from .../libblas-dev_1.2.20110419-5_amd64.deb) ... Selecting previously unselected package libbtf1.1.0. Unpacking libbtf1.1.0 (from .../libbtf1.1.0_1%3a3.4.0-3_amd64.deb) ... Selecting previously unselected package libcamd2.2.0. Unpacking libcamd2.2.0 (from .../libcamd2.2.0_1%3a3.4.0-3_amd64.deb) ... Selecting previously unselected package libccolamd2.7.1. Unpacking libccolamd2.7.1 (from .../libccolamd2.7.1_1%3a3.4.0-3_amd64.deb) ... Selecting previously unselected package libcolamd2.7.1. Unpacking libcolamd2.7.1 (from .../libcolamd2.7.1_1%3a3.4.0-3_amd64.deb) ... Selecting previously unselected package liblapack3. Unpacking liblapack3 (from .../liblapack3_3.4.1+dfsg-1+deb70u1_amd64.deb) ... Selecting previously unselected package libcholmod1.7.1. Unpacking libcholmod1.7.1 (from .../libcholmod1.7.1_1%3a3.4.0-3_amd64.deb) ... Selecting previously unselected package libcsparse2.2.3. Unpacking libcsparse2.2.3 (from .../libcsparse2.2.3_1%3a3.4.0-3_amd64.deb) ... Selecting previously unselected package libcxsparse2.2.3. Unpacking libcxsparse2.2.3 (from .../libcxsparse2.2.3_1%3a3.4.0-3_amd64.deb) ... Selecting previously unselected package libjpeg8-dev:amd64. Unpacking libjpeg8-dev:amd64 (from .../libjpeg8-dev_8d-1+deb7u1_amd64.deb) ... Selecting previously unselected package libklu1.1.0. Unpacking libklu1.1.0 (from .../libklu1.1.0_1%3a3.4.0-3_amd64.deb) ... Selecting previously unselected package liblapack-dev. Unpacking liblapack-dev (from .../liblapack-dev_3.4.1+dfsg-1+deb70u1_amd64.deb) ... Selecting previously unselected package libldl2.0.1. Unpacking libldl2.0.1 (from .../libldl2.0.1_1%3a3.4.0-3_amd64.deb) ... Selecting previously unselected package libnuma1. Unpacking libnuma1 (from .../libnuma1_2.0.8~rc4-1_amd64.deb) ... Selecting previously unselected package libpthread-stubs0:amd64. Unpacking libpthread-stubs0:amd64 (from .../libpthread-stubs0_0.3-3_amd64.deb) ... Selecting previously unselected package libpthread-stubs0-dev:amd64. Unpacking libpthread-stubs0-dev:amd64 (from .../libpthread-stubs0-dev_0.3-3_amd64.deb) ... Selecting previously unselected package libumfpack5.4.0. Unpacking libumfpack5.4.0 (from .../libumfpack5.4.0_1%3a3.4.0-3_amd64.deb) ... Selecting previously unselected package libsuitesparse-dev. Unpacking libsuitesparse-dev (from .../libsuitesparse-dev_1%3a3.4.0-3_amd64.deb) ... Selecting previously unselected package libsuperlu3. Unpacking libsuperlu3 (from .../libsuperlu3_3.0+20070106-3_amd64.deb) ... Selecting previously unselected package libsuperlu3-dev. Unpacking libsuperlu3-dev (from .../libsuperlu3-dev_3.0+20070106-3_amd64.deb) ... Selecting previously unselected package libtorque2. Unpacking libtorque2 (from .../libtorque2_2.4.16+dfsg-1+deb7u4_amd64.deb) ... Selecting previously unselected package xorg-sgml-doctools. Unpacking xorg-sgml-doctools (from .../xorg-sgml-doctools_1%3a1.10-1_all.deb) ... Selecting previously unselected package x11proto-core-dev. Unpacking x11proto-core-dev (from .../x11proto-core-dev_7.0.23-1_all.deb) ... Selecting previously unselected package libxau-dev:amd64. Unpacking libxau-dev:amd64 (from .../libxau-dev_1%3a1.0.7-1_amd64.deb) ... Selecting previously unselected package libxdmcp-dev:amd64. Unpacking libxdmcp-dev:amd64 (from .../libxdmcp-dev_1%3a1.1.1-1_amd64.deb) ... Selecting previously unselected package x11proto-input-dev. Unpacking x11proto-input-dev (from .../x11proto-input-dev_2.2-1_all.deb) ... Selecting previously unselected package x11proto-kb-dev. Unpacking x11proto-kb-dev (from .../x11proto-kb-dev_1.0.6-2_all.deb) ... Selecting previously unselected package xtrans-dev. Unpacking xtrans-dev (from .../xtrans-dev_1.2.7-1_all.deb) ... Selecting previously unselected package libxcb1-dev:amd64. Unpacking libxcb1-dev:amd64 (from .../libxcb1-dev_1.8.1-2+deb7u1_amd64.deb) ... Selecting previously unselected package libx11-dev:amd64. Unpacking libx11-dev:amd64 (from .../libx11-dev_2%3a1.5.0-1+deb7u2_amd64.deb) ... Selecting previously unselected package zlib1g-dev:amd64. Unpacking zlib1g-dev:amd64 (from .../zlib1g-dev_1%3a1.2.7.dfsg-13_amd64.deb) ... Selecting previously unselected package libibverbs1. Unpacking libibverbs1 (from .../libibverbs1_1.1.6-1_amd64.deb) ... Selecting previously unselected package libopenmpi1.3. Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.5-1_amd64.deb) ... Selecting previously unselected package openmpi-common. Unpacking openmpi-common (from .../openmpi-common_1.4.5-1_all.deb) ... Selecting previously unselected package openmpi-bin. Unpacking openmpi-bin (from .../openmpi-bin_1.4.5-1_amd64.deb) ... Selecting previously unselected package mpi-default-bin. Unpacking mpi-default-bin (from .../mpi-default-bin_1.0.1_amd64.deb) ... Selecting previously unselected package libblacs-mpi1. Unpacking libblacs-mpi1 (from .../libblacs-mpi1_1.1-31_amd64.deb) ... Selecting previously unselected package libibverbs-dev. Unpacking libibverbs-dev (from .../libibverbs-dev_1.1.6-1_amd64.deb) ... Selecting previously unselected package libopenmpi-dev. Unpacking libopenmpi-dev (from .../libopenmpi-dev_1.4.5-1_amd64.deb) ... Selecting previously unselected package mpi-default-dev. Unpacking mpi-default-dev (from .../mpi-default-dev_1.0.1_amd64.deb) ... Selecting previously unselected package libblacs-mpi-dev. Unpacking libblacs-mpi-dev (from .../libblacs-mpi-dev_1.1-31_amd64.deb) ... Selecting previously unselected package libhdf5-openmpi-7. Unpacking libhdf5-openmpi-7 (from .../libhdf5-openmpi-7_1.8.8-9+b1_amd64.deb) ... Selecting previously unselected package libhdf5-openmpi-dev. Unpacking libhdf5-openmpi-dev (from .../libhdf5-openmpi-dev_1.8.8-9+b1_amd64.deb) ... Selecting previously unselected package libhdf5-mpi-dev. Unpacking libhdf5-mpi-dev (from .../libhdf5-mpi-dev_1.8.8-9+b1_amd64.deb) ... Selecting previously unselected package libhypre-2.8.0b. Unpacking libhypre-2.8.0b (from .../libhypre-2.8.0b_2.8.0b-1_amd64.deb) ... Selecting previously unselected package libhypre-dev. Unpacking libhypre-dev (from .../libhypre-dev_2.8.0b-1_all.deb) ... Selecting previously unselected package libscalapack-mpi1. Unpacking libscalapack-mpi1 (from .../libscalapack-mpi1_1.8.0-9_amd64.deb) ... Selecting previously unselected package libmumps-4.10.0. Unpacking libmumps-4.10.0 (from .../libmumps-4.10.0_4.10.0.dfsg-3_amd64.deb) ... Selecting previously unselected package libscalapack-mpi-dev. Unpacking libscalapack-mpi-dev (from .../libscalapack-mpi-dev_1.8.0-9_amd64.deb) ... Selecting previously unselected package libmumps-dev. Unpacking libmumps-dev (from .../libmumps-dev_4.10.0.dfsg-3_amd64.deb) ... Selecting previously unselected package libscotch-5.1. Unpacking libscotch-5.1 (from .../libscotch-5.1_5.1.12b.dfsg-1.2+b1_amd64.deb) ... Selecting previously unselected package libptscotch-5.1. Unpacking libptscotch-5.1 (from .../libptscotch-5.1_5.1.12b.dfsg-1.2+b1_amd64.deb) ... Selecting previously unselected package libspooles2.2. Unpacking libspooles2.2 (from .../libspooles2.2_2.2-9_amd64.deb) ... Selecting previously unselected package libpetsc3.2. Unpacking libpetsc3.2 (from .../libpetsc3.2_3.2.dfsg-6_amd64.deb) ... Selecting previously unselected package libspooles-dev. Unpacking libspooles-dev (from .../libspooles-dev_2.2-9_amd64.deb) ... Selecting previously unselected package libscotch-dev. Unpacking libscotch-dev (from .../libscotch-dev_5.1.12b.dfsg-1.2+b1_amd64.deb) ... Selecting previously unselected package libptscotch-dev. Unpacking libptscotch-dev (from .../libptscotch-dev_5.1.12b.dfsg-1.2+b1_amd64.deb) ... Selecting previously unselected package libpetsc3.2-dev. Unpacking libpetsc3.2-dev (from .../libpetsc3.2-dev_3.2.dfsg-6_amd64.deb) ... Selecting previously unselected package petsc-dev. Unpacking petsc-dev (from .../petsc-dev_3.2.dfsg-6_all.deb) ... Setting up libquadmath0:amd64 (4.7.2-5) ... Setting up libgfortran3:amd64 (4.7.2-5) ... Setting up libgmp10:amd64 (2:5.0.5+dfsg-2) ... Setting up libgomp1:amd64 (4.7.2-5) ... Setting up libitm1:amd64 (4.7.2-5) ... Setting up libjpeg8:amd64 (8d-1+deb7u1) ... Setting up libmpfr4:amd64 (3.1.0-5) ... Setting up libxau6:amd64 (1:1.0.7-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1) ... Setting up libxcb1:amd64 (1.8.1-2+deb7u1) ... Setting up libx11-data (2:1.5.0-1+deb7u2) ... Setting up libx11-6:amd64 (2:1.5.0-1+deb7u2) ... Setting up libmpc2:amd64 (0.9-4) ... Setting up binutils (2.22-8+deb7u2) ... Setting up cpp-4.7 (4.7.2-5) ... Setting up cpp (4:4.7.2-1) ... Setting up gcc-4.7 (4.7.2-5) ... Setting up gcc (4:4.7.2-1) ... Setting up libc-dev-bin (2.13-38+deb7u10) ... Setting up linux-libc-dev:amd64 (3.2.78-1) ... Setting up libc6-dev:amd64 (2.13-38+deb7u10) ... Setting up gfortran-4.7 (4.7.2-5) ... Setting up gfortran (4:4.7.2-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode Setting up hdf5-helpers (1.8.8-9+b1) ... Setting up libamd2.2.0 (1:3.4.0-3) ... Setting up libblas3 (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode Setting up libblas-dev (1.2.20110419-5) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libbtf1.1.0 (1:3.4.0-3) ... Setting up libcamd2.2.0 (1:3.4.0-3) ... Setting up libccolamd2.7.1 (1:3.4.0-3) ... Setting up libcolamd2.7.1 (1:3.4.0-3) ... Setting up liblapack3 (3.4.1+dfsg-1+deb70u1) ... update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libcholmod1.7.1 (1:3.4.0-3) ... Setting up libcsparse2.2.3 (1:3.4.0-3) ... Setting up libcxsparse2.2.3 (1:3.4.0-3) ... Setting up libjpeg8-dev:amd64 (8d-1+deb7u1) ... Setting up libklu1.1.0 (1:3.4.0-3) ... Setting up liblapack-dev (3.4.1+dfsg-1+deb70u1) ... update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libldl2.0.1 (1:3.4.0-3) ... Setting up libnuma1 (2.0.8~rc4-1) ... Setting up libpthread-stubs0:amd64 (0.3-3) ... Setting up libpthread-stubs0-dev:amd64 (0.3-3) ... Setting up libumfpack5.4.0 (1:3.4.0-3) ... Setting up libsuitesparse-dev (1:3.4.0-3) ... Setting up libsuperlu3 (3.0+20070106-3) ... Setting up libsuperlu3-dev (3.0+20070106-3) ... Setting up libtorque2 (2.4.16+dfsg-1+deb7u4) ... Setting up xorg-sgml-doctools (1:1.10-1) ... Setting up x11proto-core-dev (7.0.23-1) ... Setting up libxau-dev:amd64 (1:1.0.7-1) ... Setting up libxdmcp-dev:amd64 (1:1.1.1-1) ... Setting up x11proto-input-dev (2.2-1) ... Setting up x11proto-kb-dev (1.0.6-2) ... Setting up xtrans-dev (1.2.7-1) ... Setting up libxcb1-dev:amd64 (1.8.1-2+deb7u1) ... Setting up libx11-dev:amd64 (2:1.5.0-1+deb7u2) ... Setting up zlib1g-dev:amd64 (1:1.2.7.dfsg-13) ... Setting up libibverbs1 (1.1.6-1) ... Setting up libopenmpi1.3 (1.4.5-1) ... Setting up openmpi-common (1.4.5-1) ... Setting up openmpi-bin (1.4.5-1) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode Setting up mpi-default-bin (1.0.1) ... Setting up libblacs-mpi1 (1.1-31) ... Setting up libibverbs-dev (1.1.6-1) ... Setting up libopenmpi-dev (1.4.5-1) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up mpi-default-dev (1.0.1) ... Setting up libblacs-mpi-dev (1.1-31) ... Setting up libhdf5-openmpi-7 (1.8.8-9+b1) ... Setting up libhdf5-openmpi-dev (1.8.8-9+b1) ... Setting up libhdf5-mpi-dev (1.8.8-9+b1) ... Setting up libhypre-2.8.0b (2.8.0b-1) ... Setting up libhypre-dev (2.8.0b-1) ... Setting up libscalapack-mpi1 (1.8.0-9) ... Setting up libmumps-4.10.0 (4.10.0.dfsg-3) ... Setting up libscalapack-mpi-dev (1.8.0-9) ... Setting up libmumps-dev (4.10.0.dfsg-3) ... Setting up libscotch-5.1 (5.1.12b.dfsg-1.2+b1) ... Setting up libptscotch-5.1 (5.1.12b.dfsg-1.2+b1) ... Setting up libspooles2.2 (2.2-9) ... Setting up libpetsc3.2 (3.2.dfsg-6) ... Setting up libspooles-dev (2.2-9) ... Setting up libscotch-dev (5.1.12b.dfsg-1.2+b1) ... Setting up libptscotch-dev (5.1.12b.dfsg-1.2+b1) ... Setting up libstdc++6-4.7-dev (4.7.2-5) ... Setting up g++-4.7 (4.7.2-5) ... Setting up g++ (4:4.7.2-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libpetsc3.2-dev (3.2.dfsg-6) ... update-alternatives: using /usr/lib/petscdir/3.2 to provide /usr/lib/petsc (petsc) in auto mode update-alternatives: using /usr/lib/petscdir/3.2/aclocal/math-blaslapack.m4 to provide /usr/share/aclocal/math-blaslapack.m4 (math-blaslapack.m4) in auto mode Setting up petsc-dev (3.2.dfsg-6) ... 0m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-get', '-y', 'install', 'petsc-dev'] 0m17.6s INFO: Running scripts post_install 0m17.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_install_exceptions'] 0m17.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_install_exceptions'] 0m17.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5kuEip'] 0m18.6s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5kuEip'] 0m18.6s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmp5kuEip to wheezy-lts 0m18.6s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main deb http://security.debian.org wheezy/updates main 0m18.6s INFO: Running scripts pre_distupgrade 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_distupgrade_exceptions'] 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_distupgrade_exceptions'] 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m18.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m18.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_distupgrade_wheezy'] 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_distupgrade_wheezy'] 0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m18.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m18.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-get', 'update'] 0m21.1s DUMP: Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Get:1 http://security.debian.org wheezy/updates Release.gpg [1601 B] Get:2 http://security.debian.org wheezy/updates Release [39.0 kB] Get:3 http://security.debian.org wheezy/updates/main amd64 Packages [605 kB] Get:4 http://security.debian.org wheezy/updates/main Translation-en [330 kB] Fetched 976 kB in 1s (687 kB/s) Reading package lists... 0m21.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-get', 'update'] 0m21.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-get', '-yf', 'dist-upgrade'] 0m29.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: bash binutils gnupg gpgv hdf5-helpers libc-bin libc-dev-bin libc6 libc6-dev libdb5.1 libhdf5-mpi-dev libhdf5-openmpi-7 libhdf5-openmpi-dev libx11-6 libx11-data libx11-dev linux-libc-dev login multiarch-support passwd perl-base sensible-utils tar tzdata 24 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 30.1 MB of archives. After this operation, 423 kB of additional disk space will be used. Get:1 http://security.debian.org/ wheezy/updates/main bash amd64 4.2+dfsg-0.1+deb7u4 [1499 kB] Get:2 http://security.debian.org/ wheezy/updates/main login amd64 1:4.1.5.1-1+deb7u1 [984 kB] Get:3 http://security.debian.org/ wheezy/updates/main perl-base amd64 5.14.2-21+deb7u5 [1534 kB] Get:4 http://security.debian.org/ wheezy/updates/main tar amd64 1.26+dfsg-0.1+deb7u1 [984 kB] Get:5 http://security.debian.org/ wheezy/updates/main libc6-dev amd64 2.13-38+deb7u12 [2663 kB] Get:6 http://security.debian.org/ wheezy/updates/main libc-dev-bin amd64 2.13-38+deb7u12 [228 kB] Get:7 http://security.debian.org/ wheezy/updates/main libc-bin amd64 2.13-38+deb7u12 [1275 kB] Get:8 http://security.debian.org/ wheezy/updates/main libc6 amd64 2.13-38+deb7u12 [4226 kB] Get:9 http://security.debian.org/ wheezy/updates/main libdb5.1 amd64 5.1.29-5+deb7u1 [723 kB] Get:10 http://security.debian.org/ wheezy/updates/main linux-libc-dev amd64 3.2.96-3 [879 kB] Get:11 http://security.debian.org/ wheezy/updates/main libx11-dev amd64 2:1.5.0-1+deb7u4 [1038 kB] Get:12 http://security.debian.org/ wheezy/updates/main libx11-data all 2:1.5.0-1+deb7u4 [189 kB] Get:13 http://security.debian.org/ wheezy/updates/main libx11-6 amd64 2:1.5.0-1+deb7u4 [902 kB] Get:14 http://security.debian.org/ wheezy/updates/main gpgv amd64 1.4.12-7+deb7u9 [229 kB] Get:15 http://security.debian.org/ wheezy/updates/main gnupg amd64 1.4.12-7+deb7u9 [1954 kB] Get:16 http://security.debian.org/ wheezy/updates/main passwd amd64 1:4.1.5.1-1+deb7u1 [1262 kB] Get:17 http://security.debian.org/ wheezy/updates/main sensible-utils all 0.0.7+deb7u1 [9000 B] Get:18 http://security.debian.org/ wheezy/updates/main tzdata all 2017c-0+deb7u1 [493 kB] Get:19 http://security.debian.org/ wheezy/updates/main multiarch-support amd64 2.13-38+deb7u12 [152 kB] Get:20 http://security.debian.org/ wheezy/updates/main binutils amd64 2.22-8+deb7u3 [4780 kB] Get:21 http://security.debian.org/ wheezy/updates/main hdf5-helpers amd64 1.8.8-9+deb7u1 [32.9 kB] Get:22 http://security.debian.org/ wheezy/updates/main libhdf5-openmpi-dev amd64 1.8.8-9+deb7u1 [2573 kB] Get:23 http://security.debian.org/ wheezy/updates/main libhdf5-openmpi-7 amd64 1.8.8-9+deb7u1 [1463 kB] Get:24 http://security.debian.org/ wheezy/updates/main libhdf5-mpi-dev amd64 1.8.8-9+deb7u1 [24.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 30.1 MB in 3s (8103 kB/s) (Reading database ... 11844 files and directories currently installed.) Preparing to replace bash 4.2+dfsg-0.1+deb7u3 (using .../bash_4.2+dfsg-0.1+deb7u4_amd64.deb) ... Unpacking replacement bash ... Setting up bash (4.2+dfsg-0.1+deb7u4) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 11844 files and directories currently installed.) Preparing to replace login 1:4.1.5.1-1 (using .../login_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement login ... Setting up login (1:4.1.5.1-1+deb7u1) ... (Reading database ... 11844 files and directories currently installed.) Preparing to replace perl-base 5.14.2-21+deb7u3 (using .../perl-base_5.14.2-21+deb7u5_amd64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-21+deb7u5) ... (Reading database ... 11844 files and directories currently installed.) Preparing to replace tar 1.26+dfsg-0.1 (using .../tar_1.26+dfsg-0.1+deb7u1_amd64.deb) ... Unpacking replacement tar ... Setting up tar (1.26+dfsg-0.1+deb7u1) ... (Reading database ... 11844 files and directories currently installed.) Preparing to replace libc6-dev:amd64 2.13-38+deb7u10 (using .../libc6-dev_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc6-dev:amd64 ... Preparing to replace libc-dev-bin 2.13-38+deb7u10 (using .../libc-dev-bin_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc-dev-bin ... Preparing to replace linux-libc-dev:amd64 3.2.78-1 (using .../linux-libc-dev_3.2.96-3_amd64.deb) ... Unpacking replacement linux-libc-dev:amd64 ... Preparing to replace libc-bin 2.13-38+deb7u10 (using .../libc-bin_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-38+deb7u12) ... (Reading database ... 11844 files and directories currently installed.) Preparing to replace libc6:amd64 2.13-38+deb7u10 (using .../libc6_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc6:amd64 ... Setting up libc6:amd64 (2.13-38+deb7u12) ... (Reading database ... 11844 files and directories currently installed.) Preparing to replace libdb5.1:amd64 5.1.29-5 (using .../libdb5.1_5.1.29-5+deb7u1_amd64.deb) ... Unpacking replacement libdb5.1:amd64 ... Setting up libdb5.1:amd64 (5.1.29-5+deb7u1) ... (Reading database ... 11844 files and directories currently installed.) Preparing to replace libx11-dev:amd64 2:1.5.0-1+deb7u2 (using .../libx11-dev_2%3a1.5.0-1+deb7u4_amd64.deb) ... Unpacking replacement libx11-dev:amd64 ... Preparing to replace libx11-data 2:1.5.0-1+deb7u2 (using .../libx11-data_2%3a1.5.0-1+deb7u4_all.deb) ... Unpacking replacement libx11-data ... Preparing to replace libx11-6:amd64 2:1.5.0-1+deb7u2 (using .../libx11-6_2%3a1.5.0-1+deb7u4_amd64.deb) ... Unpacking replacement libx11-6:amd64 ... Preparing to replace gpgv 1.4.12-7+deb7u7 (using .../gpgv_1.4.12-7+deb7u9_amd64.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.12-7+deb7u9) ... (Reading database ... 11844 files and directories currently installed.) Preparing to replace gnupg 1.4.12-7+deb7u7 (using .../gnupg_1.4.12-7+deb7u9_amd64.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.12-7+deb7u9) ... (Reading database ... 11844 files and directories currently installed.) Preparing to replace passwd 1:4.1.5.1-1 (using .../passwd_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement passwd ... Setting up passwd (1:4.1.5.1-1+deb7u1) ... (Reading database ... 11844 files and directories currently installed.) Preparing to replace sensible-utils 0.0.7 (using .../sensible-utils_0.0.7+deb7u1_all.deb) ... Unpacking replacement sensible-utils ... Setting up sensible-utils (0.0.7+deb7u1) ... (Reading database ... 11844 files and directories currently installed.) Preparing to replace tzdata 2016d-0+deb7u1 (using .../tzdata_2017c-0+deb7u1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2017c-0+deb7u1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Feb 3 20:59:37 UTC 2018. Universal Time is now: Sat Feb 3 20:59:37 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 11856 files and directories currently installed.) Preparing to replace multiarch-support 2.13-38+deb7u10 (using .../multiarch-support_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-38+deb7u12) ... (Reading database ... 11856 files and directories currently installed.) Preparing to replace binutils 2.22-8+deb7u2 (using .../binutils_2.22-8+deb7u3_amd64.deb) ... Unpacking replacement binutils ... Preparing to replace hdf5-helpers 1.8.8-9+b1 (using .../hdf5-helpers_1.8.8-9+deb7u1_amd64.deb) ... Unpacking replacement hdf5-helpers ... Preparing to replace libhdf5-openmpi-dev 1.8.8-9+b1 (using .../libhdf5-openmpi-dev_1.8.8-9+deb7u1_amd64.deb) ... Unpacking replacement libhdf5-openmpi-dev ... Preparing to replace libhdf5-openmpi-7 1.8.8-9+b1 (using .../libhdf5-openmpi-7_1.8.8-9+deb7u1_amd64.deb) ... Unpacking replacement libhdf5-openmpi-7 ... Preparing to replace libhdf5-mpi-dev 1.8.8-9+b1 (using .../libhdf5-mpi-dev_1.8.8-9+deb7u1_amd64.deb) ... Unpacking replacement libhdf5-mpi-dev ... Setting up libc-dev-bin (2.13-38+deb7u12) ... Setting up linux-libc-dev:amd64 (3.2.96-3) ... Setting up libc6-dev:amd64 (2.13-38+deb7u12) ... Setting up libx11-data (2:1.5.0-1+deb7u4) ... Setting up libx11-6:amd64 (2:1.5.0-1+deb7u4) ... Setting up libx11-dev:amd64 (2:1.5.0-1+deb7u4) ... Setting up binutils (2.22-8+deb7u3) ... Setting up hdf5-helpers (1.8.8-9+deb7u1) ... Setting up libhdf5-openmpi-7 (1.8.8-9+deb7u1) ... Setting up libhdf5-openmpi-dev (1.8.8-9+deb7u1) ... Setting up libhdf5-mpi-dev (1.8.8-9+deb7u1) ... 0m29.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-get', '-yf', 'dist-upgrade'] 0m29.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m30.1s DUMP: 4c169f7d24c584d4e8d5c8875d926be1 - 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-cache', 'show', 'petsc-dev'] 0m30.1s DUMP: Package: petsc-dev Source: petsc Version: 3.2.dfsg-6 Installed-Size: 47 Maintainer: Debian Science Maintainers Architecture: all Depends: libpetsc3.2-dev Suggests: petsc-dbg Description-en: Virtual package depending on latest PETSc development package This metapackage will always depend on the most recent version of petscX-dev (X=version), so if you install it then you will get upgrades automatically. Homepage: http://www.mcs.anl.gov/petsc Description-md5: b60e8f7f27286538faa45cfba0ce198b Tag: devel::library, role::dummy, role::metapackage Section: libdevel Priority: extra Filename: pool/main/p/petsc/petsc-dev_3.2.dfsg-6_all.deb Size: 15510 MD5sum: b0a0a6bb98dc3aa1cd232cf2d2a67b39 SHA1: c935fa9b8caa73dffe5f956b4a3b7717927d1be5 SHA256: c7ac6b4609ac8b5ec112d6337c79a8df9494ef575be8f903e65513b442ec17ac 0m30.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-cache', 'show', 'petsc-dev'] 0m30.1s INFO: apt-cache knows about the following packages: petsc-dev 0m30.1s INFO: Running scripts pre_install 0m30.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_database-server'] 0m30.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_database-server'] 0m30.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_exceptions'] 0m30.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_exceptions'] 0m30.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_extras'] 0m30.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_extras'] 0m30.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_foreign_architecture'] 0m30.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_foreign_architecture'] 0m30.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m30.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m30.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-cache', 'policy'] 0m30.2s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main Translation-en 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m30.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-cache', 'policy'] 0m30.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-cache', 'policy', 'petsc-dev'] 0m30.3s DUMP: petsc-dev: Installed: 3.2.dfsg-6 Candidate: 3.2.dfsg-6 Version table: *** 3.2.dfsg-6 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m30.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-cache', 'policy', 'petsc-dev'] 0m30.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-get', '-y', 'install', 'petsc-dev'] 0m30.6s DUMP: Reading package lists... Building dependency tree... Reading state information... petsc-dev is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-get', '-y', 'install', 'petsc-dev'] 0m30.6s INFO: Running scripts post_install 0m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_install_exceptions'] 0m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_install_exceptions'] 0m30.6s INFO: Running scripts post_distupgrade 0m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_distupgrade_exceptions'] 0m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_distupgrade_exceptions'] 0m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m30.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_distupgrade_zz_backports'] 0m30.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_distupgrade_zz_backports'] 0m30.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5kuEip'] 0m31.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5kuEip'] 0m31.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5kuEip'] 0m32.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5kuEip'] 0m32.7s INFO: Running scripts pre_install 0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_database-server'] 0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_database-server'] 0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_exceptions'] 0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_exceptions'] 0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_extras'] 0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_extras'] 0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_foreign_architecture'] 0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_foreign_architecture'] 0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m32.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m32.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-cache', 'policy'] 0m32.8s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main Translation-en 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-cache', 'policy'] 0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-cache', 'policy', 'petsc-dev'] 0m32.8s DUMP: petsc-dev: Installed: 3.2.dfsg-6 Candidate: 3.2.dfsg-6 Version table: *** 3.2.dfsg-6 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m32.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-cache', 'policy', 'petsc-dev'] 0m32.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-get', '-y', 'install', 'petsc-dev=3.2.dfsg-6'] 0m33.0s DUMP: Reading package lists... Building dependency tree... Reading state information... petsc-dev is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-get', '-y', 'install', 'petsc-dev=3.2.dfsg-6'] 0m33.0s INFO: Running scripts post_install 0m33.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_install_exceptions'] 0m33.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_install_exceptions'] 0m33.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5kuEip'] 0m34.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5kuEip'] 0m34.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m34.2s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u4 install ok installed binutils binutils 2.22-8+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed cpp cpp 4:4.7.2-1 install ok installed cpp-4.7 cpp-4.7 4.7.2-5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed g++ g++ 4:4.7.2-1 install ok installed g++-4.7 g++-4.7 4.7.2-5 install ok installed gcc gcc 4:4.7.2-1 install ok installed gcc-4.7 gcc-4.7 4.7.2-5 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gfortran gfortran 4:4.7.2-1 install ok installed gfortran-4.7 gfortran-4.7 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u9 install ok installed gpgv gpgv 1.4.12-7+deb7u9 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hdf5-helpers hdf5-helpers 1.8.8-9+deb7u1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libamd2.2.0 libamd2.2.0 1:3.4.0-3 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblacs-mpi-dev libblacs-mpi-dev 1.1-31 install ok installed libblacs-mpi1 libblacs-mpi1 1.1-31 install ok installed libblas-dev libblas-dev 1.2.20110419-5 install ok installed libblas3 libblas3 1.2.20110419-5 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbtf1.1.0 libbtf1.1.0 1:3.4.0-3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u12 install ok installed libc-dev-bin libc-dev-bin 2.13-38+deb7u12 install ok installed libc6:amd64 libc6 2.13-38+deb7u12 install ok installed libc6-dev:amd64 libc6-dev 2.13-38+deb7u12 install ok installed libcamd2.2.0 libcamd2.2.0 1:3.4.0-3 install ok installed libccolamd2.7.1 libccolamd2.7.1 1:3.4.0-3 install ok installed libcholmod1.7.1 libcholmod1.7.1 1:3.4.0-3 install ok installed libcolamd2.7.1 libcolamd2.7.1 1:3.4.0-3 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libcsparse2.2.3 libcsparse2.2.3 1:3.4.0-3 install ok installed libcxsparse2.2.3 libcxsparse2.2.3 1:3.4.0-3 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5+deb7u1 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed libgfortran3:amd64 libgfortran3 4.7.2-5 install ok installed libgmp10:amd64 libgmp10 2:5.0.5+dfsg-2 install ok installed libgomp1:amd64 libgomp1 4.7.2-5 install ok installed libhdf5-mpi-dev libhdf5-mpi-dev 1.8.8-9+deb7u1 install ok installed libhdf5-openmpi-7 libhdf5-openmpi-7 1.8.8-9+deb7u1 install ok installed libhdf5-openmpi-dev libhdf5-openmpi-dev 1.8.8-9+deb7u1 install ok installed libhypre-2.8.0b libhypre-2.8.0b 2.8.0b-1 install ok installed libhypre-dev libhypre-dev 2.8.0b-1 install ok installed libibverbs-dev libibverbs-dev 1.1.6-1 install ok installed libibverbs1 libibverbs1 1.1.6-1 install ok installed libitm1:amd64 libitm1 4.7.2-5 install ok installed libjpeg8:amd64 libjpeg8 8d-1+deb7u1 install ok installed libjpeg8-dev:amd64 libjpeg8-dev 8d-1+deb7u1 install ok installed libklu1.1.0 libklu1.1.0 1:3.4.0-3 install ok installed liblapack-dev liblapack-dev 3.4.1+dfsg-1+deb70u1 install ok installed liblapack3 liblapack3 3.4.1+dfsg-1+deb70u1 install ok installed libldl2.0.1 libldl2.0.1 1:3.4.0-3 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libmpc2:amd64 libmpc2 0.9-4 install ok installed libmpfr4:amd64 libmpfr4 3.1.0-5 install ok installed libmumps-4.10.0 libmumps-4.10.0 4.10.0.dfsg-3 install ok installed libmumps-dev libmumps-dev 4.10.0.dfsg-3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libnuma1 libnuma1 2.0.8~rc4-1 install ok installed libopenmpi-dev libopenmpi-dev 1.4.5-1 install ok installed libopenmpi1.3 libopenmpi1.3 1.4.5-1 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libpetsc3.2 libpetsc3.2 3.2.dfsg-6 install ok installed libpetsc3.2-dev libpetsc3.2-dev 3.2.dfsg-6 install ok installed libpthread-stubs0:amd64 libpthread-stubs0 0.3-3 install ok installed libpthread-stubs0-dev:amd64 libpthread-stubs0-dev 0.3-3 install ok installed libptscotch-5.1 libptscotch-5.1 5.1.12b.dfsg-1.2+b1 install ok installed libptscotch-dev libptscotch-dev 5.1.12b.dfsg-1.2+b1 install ok installed libquadmath0:amd64 libquadmath0 4.7.2-5 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libscalapack-mpi-dev libscalapack-mpi-dev 1.8.0-9 install ok installed libscalapack-mpi1 libscalapack-mpi1 1.8.0-9 install ok installed libscotch-5.1 libscotch-5.1 5.1.12b.dfsg-1.2+b1 install ok installed libscotch-dev libscotch-dev 5.1.12b.dfsg-1.2+b1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libspooles-dev libspooles-dev 2.2-9 install ok installed libspooles2.2 libspooles2.2 2.2-9 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libstdc++6-4.7-dev libstdc++6-4.7-dev 4.7.2-5 install ok installed libsuitesparse-dev libsuitesparse-dev 1:3.4.0-3 install ok installed libsuperlu3 libsuperlu3 3.0+20070106-3 install ok installed libsuperlu3-dev libsuperlu3-dev 3.0+20070106-3 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libtorque2 libtorque2 2.4.16+dfsg-1+deb7u4 install ok installed libumfpack5.4.0 libumfpack5.4.0 1:3.4.0-3 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed libx11-6:amd64 libx11-6 2:1.5.0-1+deb7u4 install ok installed libx11-data libx11-data 2:1.5.0-1+deb7u4 install ok installed libx11-dev:amd64 libx11-dev 2:1.5.0-1+deb7u4 install ok installed libxau-dev:amd64 libxau-dev 1:1.0.7-1 install ok installed libxau6:amd64 libxau6 1:1.0.7-1 install ok installed libxcb1:amd64 libxcb1 1.8.1-2+deb7u1 install ok installed libxcb1-dev:amd64 libxcb1-dev 1.8.1-2+deb7u1 install ok installed libxdmcp-dev:amd64 libxdmcp-dev 1:1.1.1-1 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.1-1 install ok installed linux-libc-dev:amd64 linux-libc-dev 3.2.96-3 install ok installed login login 1:4.1.5.1-1+deb7u1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed mpi-default-bin mpi-default-bin 1.0.1 install ok installed mpi-default-dev mpi-default-dev 1.0.1 install ok installed multiarch-support multiarch-support 2.13-38+deb7u12 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed openmpi-bin openmpi-bin 1.4.5-1 install ok installed openmpi-common openmpi-common 1.4.5-1 install ok installed passwd passwd 1:4.1.5.1-1+deb7u1 install ok installed perl-base perl-base 5.14.2-21+deb7u5 install ok installed petsc-dev petsc-dev 3.2.dfsg-6 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7+deb7u1 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1+deb7u1 install ok installed tzdata tzdata 2017c-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed x11proto-core-dev x11proto-core-dev 7.0.23-1 install ok installed x11proto-input-dev x11proto-input-dev 2.2-1 install ok installed x11proto-kb-dev x11proto-kb-dev 1.0.6-2 install ok installed xorg-sgml-doctools xorg-sgml-doctools 1:1.10-1 install ok installed xtrans-dev xtrans-dev 1.2.7-1 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 install ok installed zlib1g-dev:amd64 zlib1g-dev 1:1.2.7.dfsg-13 0m34.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m35.3s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp5kuEip', '-ac', '--ignore-obsolete'] 0m37.2s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmp5kuEip', '-ac', '--ignore-obsolete'] 0m37.2s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m37.2s DUMP: 0.15.1 0m37.2s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m37.2s INFO: Running adequate version 0.15.1 now. 0m37.2s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'petsc-dev'] 0m37.3s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'petsc-dev'] 0m37.3s INFO: Running scripts pre_remove 0m37.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m37.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m37.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m40.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m40.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m40.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m40.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m40.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m40.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_remove_exceptions'] 0m40.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/pre_remove_exceptions'] 0m40.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-get', 'remove', 'libamd2.2.0', 'libopenmpi-dev', 'libsuitesparse-dev', 'libx11-dev:amd64', 'liblapack-dev', 'libsuperlu3-dev', 'libquadmath0:amd64', 'xorg-sgml-doctools', 'libklu1.1.0', 'libxcb1:amd64', 'libc6-dev:amd64', 'x11proto-core-dev', 'libblas3', 'libibverbs-dev', 'libtorque2', 'gfortran', 'libscotch-5.1', 'libpthread-stubs0-dev:amd64', 'x11proto-input-dev', 'libcolamd2.7.1', 'libgomp1:amd64', 'libhdf5-openmpi-7', 'xtrans-dev', 'openmpi-common', 'libx11-6:amd64', 'libpetsc3.2-dev', 'libmumps-4.10.0', 'libjpeg8:amd64', 'libumfpack5.4.0', 'libxdmcp-dev:amd64', 'libscalapack-mpi-dev', 'libscalapack-mpi1', 'libgmp10:amd64', 'libbtf1.1.0', 'libhypre-2.8.0b', 'libhdf5-openmpi-dev', 'libccolamd2.7.1', 'libptscotch-dev', 'libhypre-dev', 'openmpi-bin', 'g++', 'libmumps-dev', 'libxdmcp6:amd64', 'libblacs-mpi-dev', 'libmpfr4:amd64', 'g++-4.7', 'libitm1:amd64', 'libpthread-stubs0:amd64', 'libsuperlu3', 'libxcb1-dev:amd64', 'libcholmod1.7.1', 'binutils', 'libldl2.0.1', 'libstdc++6-4.7-dev', 'libspooles-dev', 'libnuma1', 'gfortran-4.7', 'libxau-dev:amd64', 'mpi-default-dev', 'libmpc2:amd64', 'libspooles2.2', 'libpetsc3.2', 'libjpeg8-dev:amd64', 'gcc-4.7', 'libscotch-dev', 'libcamd2.2.0', 'mpi-default-bin', 'libx11-data', 'libblacs-mpi1', 'libopenmpi1.3', 'libcsparse2.2.3', 'zlib1g-dev:amd64', 'libhdf5-mpi-dev', 'libgfortran3:amd64', 'liblapack3', 'gcc', 'x11proto-kb-dev', 'libcxsparse2.2.3', 'libibverbs1', 'hdf5-helpers', 'libxau6:amd64', 'libblas-dev', 'libptscotch-5.1', 'cpp-4.7', 'libc-dev-bin', 'cpp', 'linux-libc-dev:amd64', 'petsc-dev'] 0m41.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: binutils cpp cpp-4.7 g++ g++-4.7 gcc gcc-4.7 gfortran gfortran-4.7 hdf5-helpers libamd2.2.0 libblacs-mpi-dev libblacs-mpi1 libblas-dev libblas3 libbtf1.1.0 libc-dev-bin libc6-dev libcamd2.2.0 libccolamd2.7.1 libcholmod1.7.1 libcolamd2.7.1 libcsparse2.2.3 libcxsparse2.2.3 libgfortran3 libgmp10 libgomp1 libhdf5-mpi-dev libhdf5-openmpi-7 libhdf5-openmpi-dev libhypre-2.8.0b libhypre-dev libibverbs-dev libibverbs1 libitm1 libjpeg8 libjpeg8-dev libklu1.1.0 liblapack-dev liblapack3 libldl2.0.1 libmpc2 libmpfr4 libmumps-4.10.0 libmumps-dev libnuma1 libopenmpi-dev libopenmpi1.3 libpetsc3.2 libpetsc3.2-dev libpthread-stubs0 libpthread-stubs0-dev libptscotch-5.1 libptscotch-dev libquadmath0 libscalapack-mpi-dev libscalapack-mpi1 libscotch-5.1 libscotch-dev libspooles-dev libspooles2.2 libstdc++6-4.7-dev libsuitesparse-dev libsuperlu3 libsuperlu3-dev libtorque2 libumfpack5.4.0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 linux-libc-dev mpi-default-bin mpi-default-dev openmpi-bin openmpi-common petsc-dev x11proto-core-dev x11proto-input-dev x11proto-kb-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 0 newly installed, 88 to remove and 0 not upgraded. After this operation, 305 MB disk space will be freed. (Reading database ... 11856 files and directories currently installed.) Removing petsc-dev ... Removing libpetsc3.2-dev ... Removing gfortran ... Removing g++ ... Removing gcc ... Removing gfortran-4.7 ... Removing cpp ... Removing libhdf5-mpi-dev ... Removing libhdf5-openmpi-dev ... Removing hdf5-helpers ... Removing libsuitesparse-dev ... Removing libpetsc3.2 ... Removing libumfpack5.4.0 ... Removing libklu1.1.0 ... Removing libcholmod1.7.1 ... Removing libamd2.2.0 ... Removing libmumps-dev ... Removing libscalapack-mpi-dev ... Removing libblacs-mpi-dev ... Removing libmumps-4.10.0 ... Removing libscalapack-mpi1 ... Removing libblacs-mpi1 ... Removing libhypre-dev ... Removing libsuperlu3-dev ... Removing liblapack-dev ... Removing libblas-dev ... Removing libhypre-2.8.0b ... Removing liblapack3 ... Removing libsuperlu3 ... Removing libblas3 ... Removing libbtf1.1.0 ... Removing libptscotch-dev ... Removing libscotch-dev ... Removing zlib1g-dev:amd64 ... Removing libjpeg8-dev:amd64 ... Removing libcamd2.2.0 ... Removing libccolamd2.7.1 ... Removing libcolamd2.7.1 ... Removing libcsparse2.2.3 ... Removing libcxsparse2.2.3 ... Removing libhdf5-openmpi-7 ... Removing libspooles-dev ... Removing libspooles2.2 ... Removing libptscotch-5.1 ... Removing libscotch-5.1 ... Removing mpi-default-bin ... Removing openmpi-bin ... Removing mpi-default-dev ... Removing libopenmpi-dev ... Removing libopenmpi1.3 ... Removing libgfortran3:amd64 ... Removing libibverbs-dev ... Removing libibverbs1 ... Removing libjpeg8:amd64 ... Removing libldl2.0.1 ... Removing libnuma1 ... Removing libx11-dev:amd64 ... Removing libxcb1-dev:amd64 ... Removing libpthread-stubs0-dev:amd64 ... Removing libpthread-stubs0:amd64 ... Removing libtorque2 ... Removing libx11-6:amd64 ... Removing libx11-data ... Removing libxau-dev:amd64 ... Removing libxcb1:amd64 ... Removing libxau6:amd64 ... Removing libxdmcp-dev:amd64 ... Removing libxdmcp6:amd64 ... Removing openmpi-common ... Removing x11proto-input-dev ... Removing x11proto-core-dev ... Removing x11proto-kb-dev ... Removing xorg-sgml-doctools ... Removing xtrans-dev ... Removing g++-4.7 ... Removing libstdc++6-4.7-dev ... Removing gcc-4.7 ... Removing binutils ... Removing cpp-4.7 ... Removing libc6-dev:amd64 ... Removing libc-dev-bin ... Removing libmpc2:amd64 ... Removing libmpfr4:amd64 ... Removing libgmp10:amd64 ... Removing libgomp1:amd64 ... Removing libitm1:amd64 ... Removing libquadmath0:amd64 ... Removing linux-libc-dev:amd64 ... 0m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-get', 'remove', 'libamd2.2.0', 'libopenmpi-dev', 'libsuitesparse-dev', 'libx11-dev:amd64', 'liblapack-dev', 'libsuperlu3-dev', 'libquadmath0:amd64', 'xorg-sgml-doctools', 'libklu1.1.0', 'libxcb1:amd64', 'libc6-dev:amd64', 'x11proto-core-dev', 'libblas3', 'libibverbs-dev', 'libtorque2', 'gfortran', 'libscotch-5.1', 'libpthread-stubs0-dev:amd64', 'x11proto-input-dev', 'libcolamd2.7.1', 'libgomp1:amd64', 'libhdf5-openmpi-7', 'xtrans-dev', 'openmpi-common', 'libx11-6:amd64', 'libpetsc3.2-dev', 'libmumps-4.10.0', 'libjpeg8:amd64', 'libumfpack5.4.0', 'libxdmcp-dev:amd64', 'libscalapack-mpi-dev', 'libscalapack-mpi1', 'libgmp10:amd64', 'libbtf1.1.0', 'libhypre-2.8.0b', 'libhdf5-openmpi-dev', 'libccolamd2.7.1', 'libptscotch-dev', 'libhypre-dev', 'openmpi-bin', 'g++', 'libmumps-dev', 'libxdmcp6:amd64', 'libblacs-mpi-dev', 'libmpfr4:amd64', 'g++-4.7', 'libitm1:amd64', 'libpthread-stubs0:amd64', 'libsuperlu3', 'libxcb1-dev:amd64', 'libcholmod1.7.1', 'binutils', 'libldl2.0.1', 'libstdc++6-4.7-dev', 'libspooles-dev', 'libnuma1', 'gfortran-4.7', 'libxau-dev:amd64', 'mpi-default-dev', 'libmpc2:amd64', 'libspooles2.2', 'libpetsc3.2', 'libjpeg8-dev:amd64', 'gcc-4.7', 'libscotch-dev', 'libcamd2.2.0', 'mpi-default-bin', 'libx11-data', 'libblacs-mpi1', 'libopenmpi1.3', 'libcsparse2.2.3', 'zlib1g-dev:amd64', 'libhdf5-mpi-dev', 'libgfortran3:amd64', 'liblapack3', 'gcc', 'x11proto-kb-dev', 'libcxsparse2.2.3', 'libibverbs1', 'hdf5-helpers', 'libxau6:amd64', 'libblas-dev', 'libptscotch-5.1', 'cpp-4.7', 'libc-dev-bin', 'cpp', 'linux-libc-dev:amd64', 'petsc-dev'] 0m41.8s INFO: Running scripts post_remove 0m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_remove_exceptions'] 0m41.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_remove_exceptions'] 0m41.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'dpkg', '--purge', 'libamd2.2.0', 'libopenmpi-dev', 'libsuitesparse-dev', 'libx11-dev:amd64', 'liblapack-dev', 'libsuperlu3-dev', 'libquadmath0:amd64', 'xorg-sgml-doctools', 'libklu1.1.0', 'libxcb1:amd64', 'libc6-dev:amd64', 'x11proto-core-dev', 'libblas3', 'libibverbs-dev', 'libtorque2', 'gfortran', 'libscotch-5.1', 'libpthread-stubs0-dev:amd64', 'x11proto-input-dev', 'libcolamd2.7.1', 'libgomp1:amd64', 'libhdf5-openmpi-7', 'xtrans-dev', 'openmpi-common', 'libx11-6:amd64', 'libpetsc3.2-dev', 'libmumps-4.10.0', 'libjpeg8:amd64', 'libumfpack5.4.0', 'libxdmcp-dev:amd64', 'libscalapack-mpi-dev', 'libscalapack-mpi1', 'libgmp10:amd64', 'libbtf1.1.0', 'libhypre-2.8.0b', 'libhdf5-openmpi-dev', 'libccolamd2.7.1', 'libptscotch-dev', 'libhypre-dev', 'openmpi-bin', 'g++', 'libmumps-dev', 'libxdmcp6:amd64', 'libblacs-mpi-dev', 'libmpfr4:amd64', 'g++-4.7', 'libitm1:amd64', 'libpthread-stubs0:amd64', 'libsuperlu3', 'libxcb1-dev:amd64', 'libcholmod1.7.1', 'binutils', 'libldl2.0.1', 'libstdc++6-4.7-dev', 'libspooles-dev', 'libnuma1', 'gfortran-4.7', 'libxau-dev:amd64', 'mpi-default-dev', 'libmpc2:amd64', 'libspooles2.2', 'libpetsc3.2', 'libjpeg8-dev:amd64', 'gcc-4.7', 'libscotch-dev', 'libcamd2.2.0', 'mpi-default-bin', 'libx11-data', 'libblacs-mpi1', 'libopenmpi1.3', 'libcsparse2.2.3', 'zlib1g-dev:amd64', 'libhdf5-mpi-dev', 'libgfortran3:amd64', 'liblapack3', 'gcc', 'x11proto-kb-dev', 'libcxsparse2.2.3', 'libibverbs1', 'hdf5-helpers', 'libxau6:amd64', 'libblas-dev', 'libptscotch-5.1', 'cpp-4.7', 'libc-dev-bin', 'cpp', 'linux-libc-dev:amd64'] 0m42.0s DUMP: (Reading database ... 6784 files and directories currently installed.) Removing libamd2.2.0 ... Purging configuration files for libamd2.2.0 ... dpkg: warning: ignoring request to remove libopenmpi-dev which isn't installed dpkg: warning: ignoring request to remove libsuitesparse-dev which isn't installed dpkg: warning: ignoring request to remove libx11-dev which isn't installed dpkg: warning: ignoring request to remove liblapack-dev which isn't installed dpkg: warning: ignoring request to remove libsuperlu3-dev which isn't installed Removing libquadmath0:amd64 ... Purging configuration files for libquadmath0:amd64 ... dpkg: warning: ignoring request to remove xorg-sgml-doctools which isn't installed Removing libklu1.1.0 ... Purging configuration files for libklu1.1.0 ... Removing libxcb1:amd64 ... Purging configuration files for libxcb1:amd64 ... dpkg: warning: ignoring request to remove libc6-dev which isn't installed dpkg: warning: ignoring request to remove x11proto-core-dev which isn't installed dpkg: warning: ignoring request to remove libblas3 which isn't installed dpkg: warning: ignoring request to remove libibverbs-dev which isn't installed Removing libtorque2 ... Purging configuration files for libtorque2 ... dpkg: warning: ignoring request to remove gfortran which isn't installed Removing libscotch-5.1 ... Purging configuration files for libscotch-5.1 ... dpkg: warning: ignoring request to remove libpthread-stubs0-dev which isn't installed dpkg: warning: ignoring request to remove x11proto-input-dev which isn't installed Removing libcolamd2.7.1 ... Purging configuration files for libcolamd2.7.1 ... Removing libgomp1:amd64 ... Purging configuration files for libgomp1:amd64 ... Removing libhdf5-openmpi-7 ... Purging configuration files for libhdf5-openmpi-7 ... dpkg: warning: ignoring request to remove xtrans-dev which isn't installed dpkg: warning: ignoring request to remove openmpi-common which isn't installed Removing libx11-6:amd64 ... Purging configuration files for libx11-6:amd64 ... dpkg: warning: ignoring request to remove libpetsc3.2-dev which isn't installed Removing libmumps-4.10.0 ... Purging configuration files for libmumps-4.10.0 ... dpkg: warning: ignoring request to remove libjpeg8 which isn't installed Removing libumfpack5.4.0 ... Purging configuration files for libumfpack5.4.0 ... dpkg: warning: ignoring request to remove libxdmcp-dev which isn't installed dpkg: warning: ignoring request to remove libscalapack-mpi-dev which isn't installed Removing libscalapack-mpi1 ... Purging configuration files for libscalapack-mpi1 ... Removing libgmp10:amd64 ... Purging configuration files for libgmp10:amd64 ... Removing libbtf1.1.0 ... Purging configuration files for libbtf1.1.0 ... Removing libhypre-2.8.0b ... Purging configuration files for libhypre-2.8.0b ... dpkg: warning: ignoring request to remove libhdf5-openmpi-dev which isn't installed Removing libccolamd2.7.1 ... Purging configuration files for libccolamd2.7.1 ... dpkg: warning: ignoring request to remove libptscotch-dev which isn't installed dpkg: warning: ignoring request to remove libhypre-dev which isn't installed Removing openmpi-bin ... Purging configuration files for openmpi-bin ... dpkg: warning: ignoring request to remove g++ which isn't installed dpkg: warning: ignoring request to remove libmumps-dev which isn't installed Removing libxdmcp6:amd64 ... Purging configuration files for libxdmcp6:amd64 ... dpkg: warning: ignoring request to remove libblacs-mpi-dev which isn't installed Removing libmpfr4:amd64 ... Purging configuration files for libmpfr4:amd64 ... dpkg: warning: ignoring request to remove g++-4.7 which isn't installed Removing libitm1:amd64 ... Purging configuration files for libitm1:amd64 ... dpkg: warning: ignoring request to remove libpthread-stubs0 which isn't installed Removing libsuperlu3 ... Purging configuration files for libsuperlu3 ... dpkg: warning: ignoring request to remove libxcb1-dev which isn't installed Removing libcholmod1.7.1 ... Purging configuration files for libcholmod1.7.1 ... Removing binutils ... Purging configuration files for binutils ... Removing libldl2.0.1 ... Purging configuration files for libldl2.0.1 ... dpkg: warning: ignoring request to remove libstdc++6-4.7-dev which isn't installed dpkg: warning: ignoring request to remove libspooles-dev which isn't installed Removing libnuma1 ... Purging configuration files for libnuma1 ... dpkg: warning: ignoring request to remove gfortran-4.7 which isn't installed dpkg: warning: ignoring request to remove libxau-dev which isn't installed dpkg: warning: ignoring request to remove mpi-default-dev which isn't installed Removing libmpc2:amd64 ... Purging configuration files for libmpc2:amd64 ... Removing libspooles2.2 ... Purging configuration files for libspooles2.2 ... Removing libpetsc3.2 ... Purging configuration files for libpetsc3.2 ... dpkg: warning: ignoring request to remove libjpeg8-dev which isn't installed dpkg: warning: ignoring request to remove gcc-4.7 which isn't installed dpkg: warning: ignoring request to remove libscotch-dev which isn't installed Removing libcamd2.2.0 ... Purging configuration files for libcamd2.2.0 ... dpkg: warning: ignoring request to remove mpi-default-bin which isn't installed dpkg: warning: ignoring request to remove libx11-data which isn't installed Removing libblacs-mpi1 ... Purging configuration files for libblacs-mpi1 ... Removing libopenmpi1.3 ... Purging configuration files for libopenmpi1.3 ... Removing libcsparse2.2.3 ... Purging configuration files for libcsparse2.2.3 ... dpkg: warning: ignoring request to remove zlib1g-dev which isn't installed dpkg: warning: ignoring request to remove libhdf5-mpi-dev which isn't installed Removing libgfortran3:amd64 ... Purging configuration files for libgfortran3:amd64 ... Removing liblapack3 ... Purging configuration files for liblapack3 ... dpkg: warning: ignoring request to remove gcc which isn't installed dpkg: warning: ignoring request to remove x11proto-kb-dev which isn't installed Removing libcxsparse2.2.3 ... Purging configuration files for libcxsparse2.2.3 ... Removing libibverbs1 ... Purging configuration files for libibverbs1 ... dpkg: warning: ignoring request to remove hdf5-helpers which isn't installed Removing libxau6:amd64 ... Purging configuration files for libxau6:amd64 ... dpkg: warning: ignoring request to remove libblas-dev which isn't installed Removing libptscotch-5.1 ... Purging configuration files for libptscotch-5.1 ... dpkg: warning: ignoring request to remove cpp-4.7 which isn't installed dpkg: warning: ignoring request to remove libc-dev-bin which isn't installed dpkg: warning: ignoring request to remove cpp which isn't installed dpkg: warning: ignoring request to remove linux-libc-dev which isn't installed 0m42.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'dpkg', '--purge', 'libamd2.2.0', 'libopenmpi-dev', 'libsuitesparse-dev', 'libx11-dev:amd64', 'liblapack-dev', 'libsuperlu3-dev', 'libquadmath0:amd64', 'xorg-sgml-doctools', 'libklu1.1.0', 'libxcb1:amd64', 'libc6-dev:amd64', 'x11proto-core-dev', 'libblas3', 'libibverbs-dev', 'libtorque2', 'gfortran', 'libscotch-5.1', 'libpthread-stubs0-dev:amd64', 'x11proto-input-dev', 'libcolamd2.7.1', 'libgomp1:amd64', 'libhdf5-openmpi-7', 'xtrans-dev', 'openmpi-common', 'libx11-6:amd64', 'libpetsc3.2-dev', 'libmumps-4.10.0', 'libjpeg8:amd64', 'libumfpack5.4.0', 'libxdmcp-dev:amd64', 'libscalapack-mpi-dev', 'libscalapack-mpi1', 'libgmp10:amd64', 'libbtf1.1.0', 'libhypre-2.8.0b', 'libhdf5-openmpi-dev', 'libccolamd2.7.1', 'libptscotch-dev', 'libhypre-dev', 'openmpi-bin', 'g++', 'libmumps-dev', 'libxdmcp6:amd64', 'libblacs-mpi-dev', 'libmpfr4:amd64', 'g++-4.7', 'libitm1:amd64', 'libpthread-stubs0:amd64', 'libsuperlu3', 'libxcb1-dev:amd64', 'libcholmod1.7.1', 'binutils', 'libldl2.0.1', 'libstdc++6-4.7-dev', 'libspooles-dev', 'libnuma1', 'gfortran-4.7', 'libxau-dev:amd64', 'mpi-default-dev', 'libmpc2:amd64', 'libspooles2.2', 'libpetsc3.2', 'libjpeg8-dev:amd64', 'gcc-4.7', 'libscotch-dev', 'libcamd2.2.0', 'mpi-default-bin', 'libx11-data', 'libblacs-mpi1', 'libopenmpi1.3', 'libcsparse2.2.3', 'zlib1g-dev:amd64', 'libhdf5-mpi-dev', 'libgfortran3:amd64', 'liblapack3', 'gcc', 'x11proto-kb-dev', 'libcxsparse2.2.3', 'libibverbs1', 'hdf5-helpers', 'libxau6:amd64', 'libblas-dev', 'libptscotch-5.1', 'cpp-4.7', 'libc-dev-bin', 'cpp', 'linux-libc-dev:amd64'] 0m42.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'dpkg', '--purge', 'petsc-dev'] 0m42.1s DUMP: dpkg: warning: ignoring request to remove petsc-dev which isn't installed 0m42.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'dpkg', '--purge', 'petsc-dev'] 0m42.1s INFO: Running scripts post_purge 0m42.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_purge_exceptions'] 0m42.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_purge_exceptions'] 0m42.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'dpkg', '--purge', '--pending'] 0m42.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'dpkg', '--purge', '--pending'] 0m42.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'dpkg', '--remove', '--pending'] 0m42.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'dpkg', '--remove', '--pending'] 0m42.1s INFO: Running scripts post_test 0m42.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_test_exceptions'] 0m42.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'tmp/scripts/post_test_exceptions'] 0m42.1s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5kuEip'] 0m42.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmp5kuEip'] 0m42.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'dpkg-divert', '--list'] 0m42.7s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m42.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'dpkg-divert', '--list'] 0m42.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-get', 'clean'] 0m42.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmp5kuEip', 'apt-get', 'clean'] 0m42.7s DEBUG: Recording chroot state 0m44.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5kuEip/run/shm'] 0m44.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5kuEip/run/shm'] 0m44.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5kuEip/dev/console'] 0m44.5s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5kuEip/dev/console'] 0m44.5s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5kuEip/dev/ptmx'] 0m44.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5kuEip/dev/ptmx'] 0m44.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5kuEip/dev/pts'] 0m44.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5kuEip/dev/pts'] 0m44.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmp5kuEip/proc'] 0m44.6s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmp5kuEip/proc'] 0m44.6s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp5kuEip'] 0m44.7s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmp5kuEip'] 0m44.7s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmp5kuEip 0m44.8s INFO: PASS: Upgrading between Debian distributions. 0m44.8s INFO: PASS: All tests. 0m44.8s INFO: piuparts run ends. ret=0 End: 2018-02-03 20:59:53 UTC