Start: 2018-03-10 03:44:53 UTC [wheezy] Package: pymol Version: 1.5.0.1-2 Installed-Size: 18448 Maintainer: Debichem Team Architecture: amd64 Depends: python2.7, python (>= 2.7), python (<< 2.8), freeglut3, libc6 (>= 2.7), libfreetype6 (>= 2.2.1), libgcc1 (>= 1:4.1.1), libgl1-mesa-glx | libgl1, libglew1.7 (>= 1.7.0), libglu1-mesa | libglu1, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4), python-tk, python-pmw Recommends: apbs Description: Molecular Graphics System Homepage: http://www.pymol.org Description-md5: bfc8e8676a87c0058529a662aef95313 Python-Version: 2.7 Tag: field::biology:structural, field::chemistry, implemented-in::python, interface::x11, role::program, scope::utility, uitoolkit::tk, use::viewing, works-with::image, x11::application Section: science Priority: optional Filename: pool/main/p/pymol/pymol_1.5.0.1-2_amd64.deb Size: 7613044 MD5sum: ebb9fa0381d40614a27c81a07af7841c SHA1: 8a7d374071ccafba3a184e2325d1831f38e0c7b4 SHA256: 7785d22a4c6ff4e90f02028543f7da8b939e8bc5253393c59ede35a853063282 [wheezy-lts] Package: pymol Version: 1.5.0.1-2 Installed-Size: 18448 Maintainer: Debichem Team Architecture: amd64 Depends: python2.7, python (>= 2.7), python (<< 2.8), freeglut3, libc6 (>= 2.7), libfreetype6 (>= 2.2.1), libgcc1 (>= 1:4.1.1), libgl1-mesa-glx | libgl1, libglew1.7 (>= 1.7.0), libglu1-mesa | libglu1, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4), python-tk, python-pmw Recommends: apbs Description: Molecular Graphics System Homepage: http://www.pymol.org Description-md5: bfc8e8676a87c0058529a662aef95313 Python-Version: 2.7 Tag: field::biology:structural, field::chemistry, implemented-in::python, interface::x11, role::program, scope::utility, uitoolkit::tk, use::viewing, works-with::image, x11::application Section: science Priority: optional Filename: pool/main/p/pymol/pymol_1.5.0.1-2_amd64.deb Size: 7613044 MD5sum: ebb9fa0381d40614a27c81a07af7841c SHA1: 8a7d374071ccafba3a184e2325d1831f38e0c7b4 SHA256: 7785d22a4c6ff4e90f02028543f7da8b939e8bc5253393c59ede35a853063282 Executing: sudo env PYTHONPATH=/srv/piuparts.debian.org/lib/python2.7/dist-packages timeout -s INT -k 5m 80m /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d wheezy-lts -B reference-chroot-metadata.dat --apt pymol=1.5.0.1-2 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: To quickly glance what went wrong, scroll down to the bottom of this logfile. 0m0.0s INFO: FAQ available at https://wiki.debian.org/piuparts/FAQ 0m0.0s INFO: The FAQ also explains how to contact us in case you think piuparts is wrong. 0m0.0s INFO: ------------------------------------------------------------------------------ 0m0.0s INFO: piuparts version 0.84~201801121524~0.83-4-g6e16ed9a starting up. 0m0.0s INFO: Command line arguments: /srv/piuparts.debian.org/sbin/piuparts --skip-logrotatefiles-test --warn-on-others --scriptsdir /etc/piuparts/scripts --no-eatmydata --allow-database --warn-on-leftovers-after-purge --scriptsdir /etc/piuparts/scripts-wheezy --warn-on-debsums-errors --warn-on-install-over-symlink --mirror 'http://mirror-ubc.debian.org/debian/ main' --tmpdir /srv/piuparts.debian.org/tmp --arch amd64 -b /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz -d wheezy -d wheezy-lts -B reference-chroot-metadata.dat --apt pymol=1.5.0.1-2 0m0.0s INFO: Running on: Linux piu-slave-ubc-01 4.9.0-6-amd64 #1 SMP Debian 4.9.82-1+deb9u3 (2018-03-02) x86_64 0m0.0s DEBUG: Created temporary directory /srv/piuparts.debian.org/tmp/tmpuIpqNJ 0m0.0s DEBUG: Unpacking /srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz into /srv/piuparts.debian.org/tmp/tmpuIpqNJ 0m0.0s DEBUG: Starting command: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.3s DEBUG: Command ok: ['tar', '-C', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', '-zxf', '/srv/piuparts.debian.org/slave/basetgz/wheezy_amd64.tar.gz'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/proc'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'proc', 'proc', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/proc'] 0m1.3s DEBUG: Starting command: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/dev/pts'] 0m1.3s DEBUG: Command ok: ['mount', '-t', 'devpts', '-o', 'newinstance,noexec,nosuid,gid=5,mode=0620,ptmxmode=0666', 'devpts', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/dev/pts'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/dev/ptmx'] 0m1.3s DEBUG: Command ok: ['mount', '-o', 'bind', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/dev/pts/ptmx', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/dev/ptmx'] 0m1.3s DEBUG: Starting command: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/dev/console'] 0m1.4s DEBUG: Command ok: ['mount', '-o', 'bind', '/dev/pts/4', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/dev/console'] 0m1.4s DEBUG: Starting command: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/run/shm'] 0m1.4s DEBUG: Command ok: ['mount', '-t', 'tmpfs', '-o', 'size=65536k', 'tmpfs', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/run/shm'] 0m1.4s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main 0m1.4s DEBUG: Created policy-rc.d and chmodded it. 0m1.4s DEBUG: Created resolv.conf. 0m1.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts to /srv/piuparts.debian.org/tmp/tmpuIpqNJ/tmp/scripts/ 0m1.4s DEBUG: Copying scriptsdir /etc/piuparts/scripts-wheezy to /srv/piuparts.debian.org/tmp/tmpuIpqNJ/tmp/scripts/ 0m1.4s INFO: Running scripts post_chroot_unpack 0m1.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-get', 'update'] 0m3.1s DUMP: Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Reading package lists... 0m3.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-get', 'update'] 0m3.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-get', '-yf', 'dist-upgrade'] 0m3.3s DUMP: Reading package lists... Building dependency tree... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m3.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-get', '-yf', 'dist-upgrade'] 0m3.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.5s DUMP: 0c96df6df725ee7ec7aebd2b6a77fb72 - 0m3.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m3.5s INFO: Running scripts post_setup 0m3.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_setup_dummy_users'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_setup_dummy_users'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_setup_forbid_home'] 0m3.9s DUMP: Disabling /home Adding 'local diversion of /home to /home.distrib' 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_setup_forbid_home'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.9s DUMP: Enabling dpkg --force-unsafe-io. Adding 'local diversion of /bin/sync to /bin/sync.distrib' `/bin/sync' -> `true' 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_setup_force-unsafe-io'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_setup_minimize'] 0m3.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_setup_minimize'] 0m3.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_setup_squeeze-backports'] 0m4.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m4.6s DUMP: *** Adding fake essential packages *** Reading package lists... Building dependency tree... Suggested packages: perl-modules The following NEW packages will be installed: adduser ucf 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 335 kB of archives. After this operation, 1327 kB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main adduser all 3.113+nmu3 [264 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main ucf all 3.0025+nmu3 [70.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 335 kB in 0s (15.4 MB/s) Selecting previously unselected package adduser. (Reading database ... 6639 files and directories currently installed.) Unpacking adduser (from .../adduser_3.113+nmu3_all.deb) ... Selecting previously unselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu3_all.deb) ... Moving old data out of the way Setting up adduser (3.113+nmu3) ... Setting up ucf (3.0025+nmu3) ... 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_setup_wheezy-fake-essential'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_setup_zz_backports'] 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_setup_zz_backports'] 0m4.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.6s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u3 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u7 install ok installed gpgv gpgv 1.4.12-7+deb7u7 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u10 install ok installed libc6:amd64 libc6 2.13-38+deb7u10 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed login login 1:4.1.5.1-1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u10 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1 install ok installed perl-base perl-base 5.14.2-21+deb7u3 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1 install ok installed tzdata tzdata 2016d-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m4.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m4.6s DEBUG: Loading chroot meta data from reference-chroot-metadata.dat 0m5.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ'] 0m5.4s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ'] 0m5.4s INFO: Running scripts is_testable 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/is_testable_uninstallable'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/is_testable_uninstallable'] 0m5.4s INFO: Running scripts pre_test 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_test_exceptions'] 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_test_exceptions'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_test_root_password'] 0m5.4s DUMP: Enter new UNIX password: Retype new UNIX password: passwd: password updated successfully 0m5.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_test_root_password'] 0m5.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-cache', 'show', 'pymol'] 0m5.5s DUMP: Package: pymol Version: 1.5.0.1-2 Installed-Size: 18448 Maintainer: Debichem Team Architecture: amd64 Depends: python2.7, python (>= 2.7), python (<< 2.8), freeglut3, libc6 (>= 2.7), libfreetype6 (>= 2.2.1), libgcc1 (>= 1:4.1.1), libgl1-mesa-glx | libgl1, libglew1.7 (>= 1.7.0), libglu1-mesa | libglu1, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4), python-tk, python-pmw Recommends: apbs Description-en: Molecular Graphics System PyMOL is a molecular graphics system targeted at medium to large biomolecules like proteins. It can generate high-quality publication-ready molecular graphics images and animations. . Features include: * Visualization of molecules, molecular trajectories and surfaces of crystallography data or orbitals * Molecular builder and sculptor * Internal raytracer and movie generator * Fully extensible and scriptable via a Python interface . File formats PyMOL can read include PDB, XYZ, CIF, MDL Molfile, ChemDraw, CCP4 maps, XPLOR maps and Gaussian cube maps. Homepage: http://www.pymol.org Description-md5: bfc8e8676a87c0058529a662aef95313 Python-Version: 2.7 Tag: field::biology:structural, field::chemistry, implemented-in::python, interface::x11, role::program, scope::utility, uitoolkit::tk, use::viewing, works-with::image, x11::application Section: science Priority: optional Filename: pool/main/p/pymol/pymol_1.5.0.1-2_amd64.deb Size: 7613044 MD5sum: ebb9fa0381d40614a27c81a07af7841c SHA1: 8a7d374071ccafba3a184e2325d1831f38e0c7b4 SHA256: 7785d22a4c6ff4e90f02028543f7da8b939e8bc5253393c59ede35a853063282 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-cache', 'show', 'pymol'] 0m5.5s INFO: apt-cache knows about the following packages: pymol 0m5.5s INFO: Running scripts pre_install 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_database-server'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_database-server'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_exceptions'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_exceptions'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_extras'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_extras'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_foreign_architecture'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-cache', 'policy'] 0m5.5s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m5.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-cache', 'policy'] 0m5.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-cache', 'policy', 'pymol'] 0m5.6s DUMP: pymol: Installed: (none) Candidate: 1.5.0.1-2 Version table: 1.5.0.1-2 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 0m5.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-cache', 'policy', 'pymol'] 0m5.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-get', '-y', 'install', 'pymol'] 0m11.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: blt fontconfig-config freeglut3 libdrm2 libexpat1 libfontconfig1 libfreetype6 libgl1-mesa-glx libglapi-mesa libglew1.7 libglu1-mesa libice6 libncursesw5 libpng12-0 libsm6 libsqlite3-0 libssl1.0.0 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-glx0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxmu6 libxrender1 libxss1 libxt6 libxxf86vm1 mime-support python python-minimal python-pmw python-tk python2.7 python2.7-minimal tcl8.5 tk8.5 ttf-dejavu-core x11-common Suggested packages: blt-demo glew-utils python-doc python-pmw-doc tix python-tk-dbg python2.7-doc binutils binfmt-support tcl-tclreadline Recommended packages: libgl1-mesa-dri libgpm2 file apbs xterm x-terminal-emulator The following NEW packages will be installed: blt fontconfig-config freeglut3 libdrm2 libexpat1 libfontconfig1 libfreetype6 libgl1-mesa-glx libglapi-mesa libglew1.7 libglu1-mesa libice6 libncursesw5 libpng12-0 libsm6 libsqlite3-0 libssl1.0.0 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-glx0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxmu6 libxrender1 libxss1 libxt6 libxxf86vm1 mime-support pymol python python-minimal python-pmw python-tk python2.7 python2.7-minimal tcl8.5 tk8.5 ttf-dejavu-core x11-common 0 upgraded, 46 newly installed, 0 to remove and 0 not upgraded. Need to get 24.7 MB of archives. After this operation, 64.8 MB of additional disk space will be used. Get:1 http://mirror-ubc.debian.org/debian/ wheezy/main libncursesw5 amd64 5.9-10 [141 kB] Get:2 http://mirror-ubc.debian.org/debian/ wheezy/main libssl1.0.0 amd64 1.0.1e-2+deb7u20 [1263 kB] Get:3 http://mirror-ubc.debian.org/debian/ wheezy/main libsqlite3-0 amd64 3.7.13-1+deb7u2 [454 kB] Get:4 http://mirror-ubc.debian.org/debian/ wheezy/main libdrm2 amd64 2.4.40-1~deb7u2 [459 kB] Get:5 http://mirror-ubc.debian.org/debian/ wheezy/main libglapi-mesa amd64 8.0.5-4+deb7u2 [46.8 kB] Get:6 http://mirror-ubc.debian.org/debian/ wheezy/main libxau6 amd64 1:1.0.7-1 [18.8 kB] Get:7 http://mirror-ubc.debian.org/debian/ wheezy/main libxdmcp6 amd64 1:1.1.1-1 [26.3 kB] Get:8 http://mirror-ubc.debian.org/debian/ wheezy/main libxcb1 amd64 1.8.1-2+deb7u1 [50.2 kB] Get:9 http://mirror-ubc.debian.org/debian/ wheezy/main libx11-data all 2:1.5.0-1+deb7u2 [194 kB] Get:10 http://mirror-ubc.debian.org/debian/ wheezy/main libx11-6 amd64 2:1.5.0-1+deb7u2 [901 kB] Get:11 http://mirror-ubc.debian.org/debian/ wheezy/main libx11-xcb1 amd64 2:1.5.0-1+deb7u2 [139 kB] Get:12 http://mirror-ubc.debian.org/debian/ wheezy/main libxcb-glx0 amd64 1.8.1-2+deb7u1 [32.2 kB] Get:13 http://mirror-ubc.debian.org/debian/ wheezy/main libxfixes3 amd64 1:5.0-4+deb7u1 [21.3 kB] Get:14 http://mirror-ubc.debian.org/debian/ wheezy/main libxdamage1 amd64 1:1.1.3-2 [14.3 kB] Get:15 http://mirror-ubc.debian.org/debian/ wheezy/main libxext6 amd64 2:1.3.1-2+deb7u1 [54.8 kB] Get:16 http://mirror-ubc.debian.org/debian/ wheezy/main libxxf86vm1 amd64 1:1.1.2-1+deb7u1 [19.5 kB] Get:17 http://mirror-ubc.debian.org/debian/ wheezy/main libgl1-mesa-glx amd64 8.0.5-4+deb7u2 [134 kB] Get:18 http://mirror-ubc.debian.org/debian/ wheezy/main libxi6 amd64 2:1.6.1-1+deb7u1 [75.7 kB] Get:19 http://mirror-ubc.debian.org/debian/ wheezy/main freeglut3 amd64 2.6.0-4 [141 kB] Get:20 http://mirror-ubc.debian.org/debian/ wheezy/main libexpat1 amd64 2.1.0-1+deb7u2 [139 kB] Get:21 http://mirror-ubc.debian.org/debian/ wheezy/main libfreetype6 amd64 2.4.9-1.1+deb7u3 [452 kB] Get:22 http://mirror-ubc.debian.org/debian/ wheezy/main ttf-dejavu-core all 2.33-3 [1021 kB] Get:23 http://mirror-ubc.debian.org/debian/ wheezy/main fontconfig-config all 2.9.0-7.1 [233 kB] Get:24 http://mirror-ubc.debian.org/debian/ wheezy/main libfontconfig1 amd64 2.9.0-7.1 [300 kB] Get:25 http://mirror-ubc.debian.org/debian/ wheezy/main libglu1-mesa amd64 8.0.5-4+deb7u2 [191 kB] Get:26 http://mirror-ubc.debian.org/debian/ wheezy/main x11-common all 1:7.7+3~deb7u1 [284 kB] Get:27 http://mirror-ubc.debian.org/debian/ wheezy/main libice6 amd64 2:1.0.8-2 [63.1 kB] Get:28 http://mirror-ubc.debian.org/debian/ wheezy/main libsm6 amd64 2:1.2.1-2 [34.2 kB] Get:29 http://mirror-ubc.debian.org/debian/ wheezy/main libxt6 amd64 1:1.1.3-1+deb7u1 [212 kB] Get:30 http://mirror-ubc.debian.org/debian/ wheezy/main libxmu6 amd64 2:1.1.1-1 [66.6 kB] Get:31 http://mirror-ubc.debian.org/debian/ wheezy/main libglew1.7 amd64 1.7.0-3 [141 kB] Get:32 http://mirror-ubc.debian.org/debian/ wheezy/main libpng12-0 amd64 1.2.49-1+deb7u2 [191 kB] Get:33 http://mirror-ubc.debian.org/debian/ wheezy/main libxrender1 amd64 1:0.9.7-1+deb7u2 [32.9 kB] Get:34 http://mirror-ubc.debian.org/debian/ wheezy/main libxft2 amd64 2.3.1-1 [61.0 kB] Get:35 http://mirror-ubc.debian.org/debian/ wheezy/main libxss1 amd64 1:1.2.2-1 [17.5 kB] Get:36 http://mirror-ubc.debian.org/debian/ wheezy/main mime-support all 3.52-1+deb7u1 [35.5 kB] Get:37 http://mirror-ubc.debian.org/debian/ wheezy/main python2.7-minimal amd64 2.7.3-6+deb7u2 [1785 kB] Get:38 http://mirror-ubc.debian.org/debian/ wheezy/main python2.7 amd64 2.7.3-6+deb7u2 [2728 kB] Get:39 http://mirror-ubc.debian.org/debian/ wheezy/main python-minimal all 2.7.3-4+deb7u1 [42.8 kB] Get:40 http://mirror-ubc.debian.org/debian/ wheezy/main python all 2.7.3-4+deb7u1 [181 kB] Get:41 http://mirror-ubc.debian.org/debian/ wheezy/main tcl8.5 amd64 8.5.11-2 [1627 kB] Get:42 http://mirror-ubc.debian.org/debian/ wheezy/main tk8.5 amd64 8.5.11-2 [1189 kB] Get:43 http://mirror-ubc.debian.org/debian/ wheezy/main blt amd64 2.4z-4.2 [1694 kB] Get:44 http://mirror-ubc.debian.org/debian/ wheezy/main python-tk amd64 2.7.3-1 [50.9 kB] Get:45 http://mirror-ubc.debian.org/debian/ wheezy/main python-pmw all 1.3.2-6 [120 kB] Get:46 http://mirror-ubc.debian.org/debian/ wheezy/main pymol amd64 1.5.0.1-2 [7613 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 24.7 MB in 1s (22.0 MB/s) Selecting previously unselected package libncursesw5:amd64. (Reading database ... 6768 files and directories currently installed.) Unpacking libncursesw5:amd64 (from .../libncursesw5_5.9-10_amd64.deb) ... Selecting previously unselected package libssl1.0.0:amd64. Unpacking libssl1.0.0:amd64 (from .../libssl1.0.0_1.0.1e-2+deb7u20_amd64.deb) ... Selecting previously unselected package libsqlite3-0:amd64. Unpacking libsqlite3-0:amd64 (from .../libsqlite3-0_3.7.13-1+deb7u2_amd64.deb) ... Selecting previously unselected package libdrm2:amd64. Unpacking libdrm2:amd64 (from .../libdrm2_2.4.40-1~deb7u2_amd64.deb) ... Selecting previously unselected package libglapi-mesa:amd64. Unpacking libglapi-mesa:amd64 (from .../libglapi-mesa_8.0.5-4+deb7u2_amd64.deb) ... Selecting previously unselected package libxau6:amd64. Unpacking libxau6:amd64 (from .../libxau6_1%3a1.0.7-1_amd64.deb) ... Selecting previously unselected package libxdmcp6:amd64. Unpacking libxdmcp6:amd64 (from .../libxdmcp6_1%3a1.1.1-1_amd64.deb) ... 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Unpacking python-pmw (from .../python-pmw_1.3.2-6_all.deb) ... Selecting previously unselected package pymol. Unpacking pymol (from .../pymol_1.5.0.1-2_amd64.deb) ... Setting up libncursesw5:amd64 (5.9-10) ... Setting up libssl1.0.0:amd64 (1.0.1e-2+deb7u20) ... Setting up libsqlite3-0:amd64 (3.7.13-1+deb7u2) ... Setting up libdrm2:amd64 (2.4.40-1~deb7u2) ... Setting up libglapi-mesa:amd64 (8.0.5-4+deb7u2) ... Setting up libxau6:amd64 (1:1.0.7-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1) ... Setting up libxcb1:amd64 (1.8.1-2+deb7u1) ... Setting up libx11-data (2:1.5.0-1+deb7u2) ... Setting up libx11-6:amd64 (2:1.5.0-1+deb7u2) ... Setting up libx11-xcb1:amd64 (2:1.5.0-1+deb7u2) ... Setting up libxcb-glx0:amd64 (1.8.1-2+deb7u1) ... Setting up libxfixes3:amd64 (1:5.0-4+deb7u1) ... Setting up libxdamage1:amd64 (1:1.1.3-2) ... Setting up libxext6:amd64 (2:1.3.1-2+deb7u1) ... Setting up libxxf86vm1:amd64 (1:1.1.2-1+deb7u1) ... Setting up libgl1-mesa-glx:amd64 (8.0.5-4+deb7u2) ... Setting up libxi6:amd64 (2:1.6.1-1+deb7u1) ... Setting up freeglut3:amd64 (2.6.0-4) ... Setting up libexpat1:amd64 (2.1.0-1+deb7u2) ... Setting up libfreetype6:amd64 (2.4.9-1.1+deb7u3) ... Setting up ttf-dejavu-core (2.33-3) ... Setting up fontconfig-config (2.9.0-7.1) ... Setting up libfontconfig1:amd64 (2.9.0-7.1) ... Setting up libglu1-mesa:amd64 (8.0.5-4+deb7u2) ... Setting up x11-common (1:7.7+3~deb7u1) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.8-2) ... Setting up libsm6:amd64 (2:1.2.1-2) ... Setting up libxt6:amd64 (1:1.1.3-1+deb7u1) ... Setting up libxmu6:amd64 (2:1.1.1-1) ... Setting up libglew1.7:amd64 (1.7.0-3) ... Setting up libpng12-0:amd64 (1.2.49-1+deb7u2) ... Setting up libxrender1:amd64 (1:0.9.7-1+deb7u2) ... Setting up libxft2:amd64 (2.3.1-1) ... Setting up libxss1:amd64 (1:1.2.2-1) ... Setting up mime-support (3.52-1+deb7u1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up python2.7-minimal (2.7.3-6+deb7u2) ... Setting up python2.7 (2.7.3-6+deb7u2) ... Setting up python-minimal (2.7.3-4+deb7u1) ... Setting up python (2.7.3-4+deb7u1) ... Setting up tcl8.5 (8.5.11-2) ... update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode Setting up tk8.5 (8.5.11-2) ... update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode Setting up blt (2.4z-4.2) ... Setting up python-tk (2.7.3-1) ... Setting up python-pmw (1.3.2-6) ... Setting up pymol (1.5.0.1-2) ... 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-get', '-y', 'install', 'pymol'] 0m11.8s INFO: Running scripts post_install 0m11.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_install_exceptions'] 0m11.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_install_exceptions'] 0m11.8s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ'] 0m12.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ'] 0m12.3s DEBUG: Upgrading /srv/piuparts.debian.org/tmp/tmpuIpqNJ to wheezy-lts 0m12.3s DEBUG: sources.list: deb http://mirror-ubc.debian.org/debian/ wheezy main deb http://security.debian.org wheezy/updates main 0m12.3s INFO: Running scripts pre_distupgrade 0m12.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_distupgrade_exceptions'] 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_distupgrade_exceptions'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_distupgrade_foreign_architecture_i386'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_distupgrade_wheezy'] 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_distupgrade_wheezy'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_distupgrade_zz_database-server'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m12.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_distupgrade_zz_upgrade_early'] 0m12.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-get', 'update'] 0m14.1s DUMP: Hit http://mirror-ubc.debian.org wheezy Release.gpg Hit http://mirror-ubc.debian.org wheezy Release Hit http://mirror-ubc.debian.org wheezy/main amd64 Packages Hit http://mirror-ubc.debian.org wheezy/main Translation-en Get:1 http://security.debian.org wheezy/updates Release.gpg [1601 B] Get:2 http://security.debian.org wheezy/updates Release [39.0 kB] Get:3 http://security.debian.org wheezy/updates/main amd64 Packages [614 kB] Get:4 http://security.debian.org wheezy/updates/main Translation-en [336 kB] Fetched 990 kB in 0s (1174 kB/s) Reading package lists... 0m14.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-get', 'update'] 0m14.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-get', '-yf', 'dist-upgrade'] 0m21.4s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: bash fontconfig-config gnupg gpgv libc-bin libc6 libdb5.1 libexpat1 libfontconfig1 libfreetype6 libsqlite3-0 libssl1.0.0 libx11-6 libx11-data libx11-xcb1 libxfixes3 libxi6 libxrender1 login multiarch-support passwd perl-base python2.7 python2.7-minimal sensible-utils tar tzdata 27 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 24.1 MB of archives. After this operation, 887 kB of additional disk space will be used. Get:1 http://security.debian.org/ wheezy/updates/main bash amd64 4.2+dfsg-0.1+deb7u4 [1499 kB] Get:2 http://security.debian.org/ wheezy/updates/main login amd64 1:4.1.5.1-1+deb7u1 [984 kB] Get:3 http://security.debian.org/ wheezy/updates/main perl-base amd64 5.14.2-21+deb7u5 [1534 kB] Get:4 http://security.debian.org/ wheezy/updates/main tar amd64 1.26+dfsg-0.1+deb7u1 [984 kB] Get:5 http://security.debian.org/ wheezy/updates/main libc-bin amd64 2.13-38+deb7u12 [1275 kB] Get:6 http://security.debian.org/ wheezy/updates/main libc6 amd64 2.13-38+deb7u12 [4226 kB] Get:7 http://security.debian.org/ wheezy/updates/main libdb5.1 amd64 5.1.29-5+deb7u1 [723 kB] Get:8 http://security.debian.org/ wheezy/updates/main libssl1.0.0 amd64 1.0.1t-1+deb7u3 [1281 kB] Get:9 http://security.debian.org/ wheezy/updates/main libexpat1 amd64 2.1.0-1+deb7u5 [139 kB] Get:10 http://security.debian.org/ wheezy/updates/main libfreetype6 amd64 2.4.9-1.1+deb7u7 [454 kB] Get:11 http://security.debian.org/ wheezy/updates/main libfontconfig1 amd64 2.9.0-7.1+deb7u1 [300 kB] Get:12 http://security.debian.org/ wheezy/updates/main fontconfig-config all 2.9.0-7.1+deb7u1 [233 kB] Get:13 http://security.debian.org/ wheezy/updates/main libsqlite3-0 amd64 3.7.13-1+deb7u4 [454 kB] Get:14 http://security.debian.org/ wheezy/updates/main libx11-data all 2:1.5.0-1+deb7u4 [189 kB] Get:15 http://security.debian.org/ wheezy/updates/main libx11-6 amd64 2:1.5.0-1+deb7u4 [902 kB] Get:16 http://security.debian.org/ wheezy/updates/main libx11-xcb1 amd64 2:1.5.0-1+deb7u4 [139 kB] Get:17 http://security.debian.org/ wheezy/updates/main libxfixes3 amd64 1:5.0-4+deb7u2 [21.6 kB] Get:18 http://security.debian.org/ wheezy/updates/main libxi6 amd64 2:1.6.1-1+deb7u3 [76.4 kB] Get:19 http://security.debian.org/ wheezy/updates/main libxrender1 amd64 1:0.9.7-1+deb7u3 [33.5 kB] Get:20 http://security.debian.org/ wheezy/updates/main gpgv amd64 1.4.12-7+deb7u9 [229 kB] Get:21 http://security.debian.org/ wheezy/updates/main gnupg amd64 1.4.12-7+deb7u9 [1954 kB] Get:22 http://security.debian.org/ wheezy/updates/main passwd amd64 1:4.1.5.1-1+deb7u1 [1262 kB] Get:23 http://security.debian.org/ wheezy/updates/main sensible-utils all 0.0.7+deb7u1 [9000 B] Get:24 http://security.debian.org/ wheezy/updates/main tzdata all 2018c-0+deb7u1 [496 kB] Get:25 http://security.debian.org/ wheezy/updates/main multiarch-support amd64 2.13-38+deb7u12 [152 kB] Get:26 http://security.debian.org/ wheezy/updates/main python2.7 amd64 2.7.3-6+deb7u4 [2731 kB] Get:27 http://security.debian.org/ wheezy/updates/main python2.7-minimal amd64 2.7.3-6+deb7u4 [1786 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 24.1 MB in 2s (11.7 MB/s) (Reading database ... 9499 files and directories currently installed.) Preparing to replace bash 4.2+dfsg-0.1+deb7u3 (using .../bash_4.2+dfsg-0.1+deb7u4_amd64.deb) ... Unpacking replacement bash ... Setting up bash (4.2+dfsg-0.1+deb7u4) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 9499 files and directories currently installed.) Preparing to replace login 1:4.1.5.1-1 (using .../login_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement login ... Setting up login (1:4.1.5.1-1+deb7u1) ... (Reading database ... 9499 files and directories currently installed.) Preparing to replace perl-base 5.14.2-21+deb7u3 (using .../perl-base_5.14.2-21+deb7u5_amd64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.14.2-21+deb7u5) ... (Reading database ... 9499 files and directories currently installed.) Preparing to replace tar 1.26+dfsg-0.1 (using .../tar_1.26+dfsg-0.1+deb7u1_amd64.deb) ... Unpacking replacement tar ... Processing triggers for mime-support ... Setting up tar (1.26+dfsg-0.1+deb7u1) ... (Reading database ... 9499 files and directories currently installed.) Preparing to replace libc-bin 2.13-38+deb7u10 (using .../libc-bin_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc-bin ... Setting up libc-bin (2.13-38+deb7u12) ... (Reading database ... 9499 files and directories currently installed.) Preparing to replace libc6:amd64 2.13-38+deb7u10 (using .../libc6_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement libc6:amd64 ... Setting up libc6:amd64 (2.13-38+deb7u12) ... (Reading database ... 9499 files and directories currently installed.) Preparing to replace libdb5.1:amd64 5.1.29-5 (using .../libdb5.1_5.1.29-5+deb7u1_amd64.deb) ... Unpacking replacement libdb5.1:amd64 ... Setting up libdb5.1:amd64 (5.1.29-5+deb7u1) ... (Reading database ... 9499 files and directories currently installed.) Preparing to replace libssl1.0.0:amd64 1.0.1e-2+deb7u20 (using .../libssl1.0.0_1.0.1t-1+deb7u3_amd64.deb) ... Unpacking replacement libssl1.0.0:amd64 ... Preparing to replace libexpat1:amd64 2.1.0-1+deb7u2 (using .../libexpat1_2.1.0-1+deb7u5_amd64.deb) ... Unpacking replacement libexpat1:amd64 ... Preparing to replace libfreetype6:amd64 2.4.9-1.1+deb7u3 (using .../libfreetype6_2.4.9-1.1+deb7u7_amd64.deb) ... Unpacking replacement libfreetype6:amd64 ... Preparing to replace libfontconfig1:amd64 2.9.0-7.1 (using .../libfontconfig1_2.9.0-7.1+deb7u1_amd64.deb) ... Unpacking replacement libfontconfig1:amd64 ... Preparing to replace fontconfig-config 2.9.0-7.1 (using .../fontconfig-config_2.9.0-7.1+deb7u1_all.deb) ... Unpacking replacement fontconfig-config ... Preparing to replace libsqlite3-0:amd64 3.7.13-1+deb7u2 (using .../libsqlite3-0_3.7.13-1+deb7u4_amd64.deb) ... Unpacking replacement libsqlite3-0:amd64 ... Preparing to replace libx11-data 2:1.5.0-1+deb7u2 (using .../libx11-data_2%3a1.5.0-1+deb7u4_all.deb) ... Unpacking replacement libx11-data ... Preparing to replace libx11-6:amd64 2:1.5.0-1+deb7u2 (using .../libx11-6_2%3a1.5.0-1+deb7u4_amd64.deb) ... Unpacking replacement libx11-6:amd64 ... Preparing to replace libx11-xcb1:amd64 2:1.5.0-1+deb7u2 (using .../libx11-xcb1_2%3a1.5.0-1+deb7u4_amd64.deb) ... Unpacking replacement libx11-xcb1:amd64 ... Preparing to replace libxfixes3:amd64 1:5.0-4+deb7u1 (using .../libxfixes3_1%3a5.0-4+deb7u2_amd64.deb) ... Unpacking replacement libxfixes3:amd64 ... Preparing to replace libxi6:amd64 2:1.6.1-1+deb7u1 (using .../libxi6_2%3a1.6.1-1+deb7u3_amd64.deb) ... Unpacking replacement libxi6:amd64 ... Preparing to replace libxrender1:amd64 1:0.9.7-1+deb7u2 (using .../libxrender1_1%3a0.9.7-1+deb7u3_amd64.deb) ... Unpacking replacement libxrender1:amd64 ... Preparing to replace gpgv 1.4.12-7+deb7u7 (using .../gpgv_1.4.12-7+deb7u9_amd64.deb) ... Unpacking replacement gpgv ... Setting up gpgv (1.4.12-7+deb7u9) ... (Reading database ... 9499 files and directories currently installed.) Preparing to replace gnupg 1.4.12-7+deb7u7 (using .../gnupg_1.4.12-7+deb7u9_amd64.deb) ... Unpacking replacement gnupg ... Setting up gnupg (1.4.12-7+deb7u9) ... (Reading database ... 9499 files and directories currently installed.) Preparing to replace passwd 1:4.1.5.1-1 (using .../passwd_1%3a4.1.5.1-1+deb7u1_amd64.deb) ... Unpacking replacement passwd ... Setting up passwd (1:4.1.5.1-1+deb7u1) ... (Reading database ... 9499 files and directories currently installed.) Preparing to replace sensible-utils 0.0.7 (using .../sensible-utils_0.0.7+deb7u1_all.deb) ... Unpacking replacement sensible-utils ... Processing triggers for mime-support ... Setting up sensible-utils (0.0.7+deb7u1) ... (Reading database ... 9499 files and directories currently installed.) Preparing to replace tzdata 2016d-0+deb7u1 (using .../tzdata_2018c-0+deb7u1_all.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2018c-0+deb7u1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Mar 10 03:45:12 UTC 2018. Universal Time is now: Sat Mar 10 03:45:12 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 9511 files and directories currently installed.) Preparing to replace multiarch-support 2.13-38+deb7u10 (using .../multiarch-support_2.13-38+deb7u12_amd64.deb) ... Unpacking replacement multiarch-support ... Setting up multiarch-support (2.13-38+deb7u12) ... (Reading database ... 9511 files and directories currently installed.) Preparing to replace python2.7 2.7.3-6+deb7u2 (using .../python2.7_2.7.3-6+deb7u4_amd64.deb) ... Unpacking replacement python2.7 ... Preparing to replace python2.7-minimal 2.7.3-6+deb7u2 (using .../python2.7-minimal_2.7.3-6+deb7u4_amd64.deb) ... Unpacking replacement python2.7-minimal ... Setting up libssl1.0.0:amd64 (1.0.1t-1+deb7u3) ... Setting up libexpat1:amd64 (2.1.0-1+deb7u5) ... Setting up libfreetype6:amd64 (2.4.9-1.1+deb7u7) ... Setting up fontconfig-config (2.9.0-7.1+deb7u1) ... Setting up libfontconfig1:amd64 (2.9.0-7.1+deb7u1) ... Setting up libsqlite3-0:amd64 (3.7.13-1+deb7u4) ... Setting up libx11-data (2:1.5.0-1+deb7u4) ... Setting up libx11-6:amd64 (2:1.5.0-1+deb7u4) ... Setting up libx11-xcb1:amd64 (2:1.5.0-1+deb7u4) ... Setting up libxfixes3:amd64 (1:5.0-4+deb7u2) ... Setting up libxi6:amd64 (2:1.6.1-1+deb7u3) ... Setting up libxrender1:amd64 (1:0.9.7-1+deb7u3) ... Setting up python2.7-minimal (2.7.3-6+deb7u4) ... Setting up python2.7 (2.7.3-6+deb7u4) ... 0m21.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-get', '-yf', 'dist-upgrade'] 0m21.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m21.5s DUMP: 642de64d264d955da33e40bac0f03033 - 0m21.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'sh', '-c', 'apt-cache dumpavail | md5sum'] 0m21.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-cache', 'show', 'pymol'] 0m21.6s DUMP: Package: pymol Version: 1.5.0.1-2 Installed-Size: 18448 Maintainer: Debichem Team Architecture: amd64 Depends: python2.7, python (>= 2.7), python (<< 2.8), freeglut3, libc6 (>= 2.7), libfreetype6 (>= 2.2.1), libgcc1 (>= 1:4.1.1), libgl1-mesa-glx | libgl1, libglew1.7 (>= 1.7.0), libglu1-mesa | libglu1, libpng12-0 (>= 1.2.13-4), libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4), python-tk, python-pmw Recommends: apbs Description-en: Molecular Graphics System PyMOL is a molecular graphics system targeted at medium to large biomolecules like proteins. It can generate high-quality publication-ready molecular graphics images and animations. . Features include: * Visualization of molecules, molecular trajectories and surfaces of crystallography data or orbitals * Molecular builder and sculptor * Internal raytracer and movie generator * Fully extensible and scriptable via a Python interface . File formats PyMOL can read include PDB, XYZ, CIF, MDL Molfile, ChemDraw, CCP4 maps, XPLOR maps and Gaussian cube maps. Homepage: http://www.pymol.org Description-md5: bfc8e8676a87c0058529a662aef95313 Python-Version: 2.7 Tag: field::biology:structural, field::chemistry, implemented-in::python, interface::x11, role::program, scope::utility, uitoolkit::tk, use::viewing, works-with::image, x11::application Section: science Priority: optional Filename: pool/main/p/pymol/pymol_1.5.0.1-2_amd64.deb Size: 7613044 MD5sum: ebb9fa0381d40614a27c81a07af7841c SHA1: 8a7d374071ccafba3a184e2325d1831f38e0c7b4 SHA256: 7785d22a4c6ff4e90f02028543f7da8b939e8bc5253393c59ede35a853063282 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-cache', 'show', 'pymol'] 0m21.6s INFO: apt-cache knows about the following packages: pymol 0m21.6s INFO: Running scripts pre_install 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_database-server'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_database-server'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_exceptions'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_exceptions'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_extras'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_extras'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_foreign_architecture'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m21.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-cache', 'policy'] 0m21.7s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main Translation-en 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-cache', 'policy'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-cache', 'policy', 'pymol'] 0m21.7s DUMP: pymol: Installed: 1.5.0.1-2 Candidate: 1.5.0.1-2 Version table: *** 1.5.0.1-2 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m21.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-cache', 'policy', 'pymol'] 0m21.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-get', '-y', 'install', 'pymol'] 0m21.9s DUMP: Reading package lists... Building dependency tree... Reading state information... pymol is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-get', '-y', 'install', 'pymol'] 0m21.9s INFO: Running scripts post_install 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_install_exceptions'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_install_exceptions'] 0m21.9s INFO: Running scripts post_distupgrade 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_distupgrade_base_cleanup'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_distupgrade_exceptions'] 0m21.9s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_distupgrade_exceptions'] 0m21.9s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_distupgrade_force-unsafe-io'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_distupgrade_squeeze-backports'] 0m22.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_distupgrade_zz_backports'] 0m22.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_distupgrade_zz_backports'] 0m22.0s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ'] 0m22.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ'] 0m22.7s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ'] 0m23.3s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ'] 0m23.3s INFO: Running scripts pre_install 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_database-server'] 0m23.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_database-server'] 0m23.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_exceptions'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_exceptions'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_extras'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_extras'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_foreign_architecture'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_install_foreign_architecture_i386'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-cache', 'policy'] 0m23.4s DUMP: Package files: 100 /var/lib/dpkg/status release a=now 500 http://security.debian.org/ wheezy/updates/main Translation-en 500 http://security.debian.org/ wheezy/updates/main amd64 Packages release v=7.0,o=Debian,a=oldoldstable,n=wheezy,l=Debian-Security,c=main origin security.debian.org 500 http://mirror-ubc.debian.org/debian/ wheezy/main Translation-en 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages release v=7.11,o=Debian,a=oldoldstable,n=wheezy,l=Debian,c=main origin mirror-ubc.debian.org Pinned packages: 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-cache', 'policy'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-cache', 'policy', 'pymol'] 0m23.4s DUMP: pymol: Installed: 1.5.0.1-2 Candidate: 1.5.0.1-2 Version table: *** 1.5.0.1-2 0 500 http://mirror-ubc.debian.org/debian/ wheezy/main amd64 Packages 100 /var/lib/dpkg/status 0m23.4s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-cache', 'policy', 'pymol'] 0m23.4s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-get', '-y', 'install', 'pymol=1.5.0.1-2'] 0m23.6s DUMP: Reading package lists... Building dependency tree... Reading state information... pymol is already the newest version. 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 0m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-get', '-y', 'install', 'pymol=1.5.0.1-2'] 0m23.6s INFO: Running scripts post_install 0m23.6s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_install_exceptions'] 0m23.6s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_install_exceptions'] 0m23.6s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ'] 0m24.2s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ'] 0m24.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m24.2s DUMP: install ok installed adduser adduser 3.113+nmu3 install ok installed apt apt 0.9.7.9+deb7u7 install ok installed base-files base-files 7.1wheezy11 install ok installed base-passwd base-passwd 3.5.26 install ok installed bash bash 4.2+dfsg-0.1+deb7u4 install ok installed blt blt 2.4z-4.2 install ok installed bsdutils bsdutils 1:2.20.1-5.3 install ok installed coreutils coreutils 8.13-3.5 install ok installed dash dash 0.5.7-3 install ok installed debconf debconf 1.5.49 install ok installed debconf-i18n debconf-i18n 1.5.49 install ok installed debian-archive-keyring debian-archive-keyring 2014.3~deb7u1 install ok installed debianutils debianutils 4.3.2 install ok installed diffutils diffutils 1:3.2-6 install ok installed dpkg dpkg 1.16.18 install ok installed e2fslibs:amd64 e2fslibs 1.42.5-1.1+deb7u1 install ok installed e2fsprogs e2fsprogs 1.42.5-1.1+deb7u1 install ok installed findutils findutils 4.4.2-4 install ok installed fontconfig-config fontconfig-config 2.9.0-7.1+deb7u1 install ok installed freeglut3:amd64 freeglut3 2.6.0-4 install ok installed gcc-4.7-base:amd64 gcc-4.7-base 4.7.2-5 install ok installed gnupg gnupg 1.4.12-7+deb7u9 install ok installed gpgv gpgv 1.4.12-7+deb7u9 install ok installed grep grep 2.12-2 install ok installed gzip gzip 1.5-1.1 install ok installed hostname hostname 3.11 install ok installed initscripts initscripts 2.88dsf-41+deb7u1 install ok installed insserv insserv 1.14.0-5 install ok installed libacl1:amd64 libacl1 2.2.51-8 install ok installed libapt-pkg4.12:amd64 libapt-pkg4.12 0.9.7.9+deb7u7 install ok installed libattr1:amd64 libattr1 1:2.4.46-8 install ok installed libblkid1:amd64 libblkid1 2.20.1-5.3 install ok installed libbz2-1.0:amd64 libbz2-1.0 1.0.6-4 install ok installed libc-bin libc-bin 2.13-38+deb7u12 install ok installed libc6:amd64 libc6 2.13-38+deb7u12 install ok installed libcomerr2:amd64 libcomerr2 1.42.5-1.1+deb7u1 install ok installed libdb5.1:amd64 libdb5.1 5.1.29-5+deb7u1 install ok installed libdrm2:amd64 libdrm2 2.4.40-1~deb7u2 install ok installed libexpat1:amd64 libexpat1 2.1.0-1+deb7u5 install ok installed libfontconfig1:amd64 libfontconfig1 2.9.0-7.1+deb7u1 install ok installed libfreetype6:amd64 libfreetype6 2.4.9-1.1+deb7u7 install ok installed libgcc1:amd64 libgcc1 1:4.7.2-5 install ok installed libgl1-mesa-glx:amd64 libgl1-mesa-glx 8.0.5-4+deb7u2 install ok installed libglapi-mesa:amd64 libglapi-mesa 8.0.5-4+deb7u2 install ok installed libglew1.7:amd64 libglew1.7 1.7.0-3 install ok installed libglu1-mesa:amd64 libglu1-mesa 8.0.5-4+deb7u2 install ok installed libice6:amd64 libice6 2:1.0.8-2 install ok installed liblocale-gettext-perl liblocale-gettext-perl 1.05-7+b1 install ok installed liblzma5:amd64 liblzma5 5.1.1alpha+20120614-2 install ok installed libmount1 libmount1 2.20.1-5.3 install ok installed libncurses5:amd64 libncurses5 5.9-10 install ok installed libncursesw5:amd64 libncursesw5 5.9-10 install ok installed libpam-modules:amd64 libpam-modules 1.1.3-7.1 install ok installed libpam-modules-bin libpam-modules-bin 1.1.3-7.1 install ok installed libpam-runtime libpam-runtime 1.1.3-7.1 install ok installed libpam0g:amd64 libpam0g 1.1.3-7.1 install ok installed libpng12-0:amd64 libpng12-0 1.2.49-1+deb7u2 install ok installed libreadline6:amd64 libreadline6 6.2+dfsg-0.1 install ok installed libselinux1:amd64 libselinux1 2.1.9-5 install ok installed libsemanage-common libsemanage-common 2.1.6-6 install ok installed libsemanage1:amd64 libsemanage1 2.1.6-6 install ok installed libsepol1:amd64 libsepol1 2.1.4-3 install ok installed libslang2:amd64 libslang2 2.2.4-15 install ok installed libsm6:amd64 libsm6 2:1.2.1-2 install ok installed libsqlite3-0:amd64 libsqlite3-0 3.7.13-1+deb7u4 install ok installed libss2:amd64 libss2 1.42.5-1.1+deb7u1 install ok installed libssl1.0.0:amd64 libssl1.0.0 1.0.1t-1+deb7u3 install ok installed libstdc++6:amd64 libstdc++6 4.7.2-5 install ok installed libtext-charwidth-perl libtext-charwidth-perl 0.04-7+b1 install ok installed libtext-iconv-perl libtext-iconv-perl 1.7-5 install ok installed libtext-wrapi18n-perl libtext-wrapi18n-perl 0.06-7 install ok installed libtinfo5:amd64 libtinfo5 5.9-10 install ok installed libusb-0.1-4:amd64 libusb-0.1-4 2:0.1.12-20+nmu1 install ok installed libustr-1.0-1:amd64 libustr-1.0-1 1.0.4-3 install ok installed libuuid1:amd64 libuuid1 2.20.1-5.3 install ok installed libx11-6:amd64 libx11-6 2:1.5.0-1+deb7u4 install ok installed libx11-data libx11-data 2:1.5.0-1+deb7u4 install ok installed libx11-xcb1:amd64 libx11-xcb1 2:1.5.0-1+deb7u4 install ok installed libxau6:amd64 libxau6 1:1.0.7-1 install ok installed libxcb-glx0:amd64 libxcb-glx0 1.8.1-2+deb7u1 install ok installed libxcb1:amd64 libxcb1 1.8.1-2+deb7u1 install ok installed libxdamage1:amd64 libxdamage1 1:1.1.3-2 install ok installed libxdmcp6:amd64 libxdmcp6 1:1.1.1-1 install ok installed libxext6:amd64 libxext6 2:1.3.1-2+deb7u1 install ok installed libxfixes3:amd64 libxfixes3 1:5.0-4+deb7u2 install ok installed libxft2:amd64 libxft2 2.3.1-1 install ok installed libxi6:amd64 libxi6 2:1.6.1-1+deb7u3 install ok installed libxmu6:amd64 libxmu6 2:1.1.1-1 install ok installed libxrender1:amd64 libxrender1 1:0.9.7-1+deb7u3 install ok installed libxss1:amd64 libxss1 1:1.2.2-1 install ok installed libxt6:amd64 libxt6 1:1.1.3-1+deb7u1 install ok installed libxxf86vm1:amd64 libxxf86vm1 1:1.1.2-1+deb7u1 install ok installed login login 1:4.1.5.1-1+deb7u1 install ok installed lsb-base lsb-base 4.1+Debian8+deb7u1 install ok installed mawk mawk 1.3.3-17 install ok installed mime-support mime-support 3.52-1+deb7u1 install ok installed mount mount 2.20.1-5.3 install ok installed multiarch-support multiarch-support 2.13-38+deb7u12 install ok installed ncurses-base ncurses-base 5.9-10 install ok installed ncurses-bin ncurses-bin 5.9-10 install ok installed passwd passwd 1:4.1.5.1-1+deb7u1 install ok installed perl-base perl-base 5.14.2-21+deb7u5 install ok installed pymol pymol 1.5.0.1-2 install ok installed python python 2.7.3-4+deb7u1 install ok installed python-minimal python-minimal 2.7.3-4+deb7u1 install ok installed python-pmw python-pmw 1.3.2-6 install ok installed python-tk python-tk 2.7.3-1 install ok installed python2.7 python2.7 2.7.3-6+deb7u4 install ok installed python2.7-minimal python2.7-minimal 2.7.3-6+deb7u4 install ok installed readline-common readline-common 6.2+dfsg-0.1 install ok installed sed sed 4.2.1-10 install ok installed sensible-utils sensible-utils 0.0.7+deb7u1 install ok installed sysv-rc sysv-rc 2.88dsf-41+deb7u1 install ok installed sysvinit sysvinit 2.88dsf-41+deb7u1 install ok installed sysvinit-utils sysvinit-utils 2.88dsf-41+deb7u1 install ok installed tar tar 1.26+dfsg-0.1+deb7u1 install ok installed tcl8.5 tcl8.5 8.5.11-2 install ok installed tk8.5 tk8.5 8.5.11-2 install ok installed ttf-dejavu-core ttf-dejavu-core 2.33-3 install ok installed tzdata tzdata 2018c-0+deb7u1 install ok installed ucf ucf 3.0025+nmu3 install ok installed util-linux util-linux 2.20.1-5.3 install ok installed x11-common x11-common 1:7.7+3~deb7u1 install ok installed xz-utils xz-utils 5.1.1alpha+20120614-2 install ok installed zlib1g:amd64 zlib1g 1:1.2.7.dfsg-13 0m24.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'dpkg-query', '-W', '-f', '${Status}\\t${binary:Package}\\t${Package}\\t${Version}\\n'] 0m24.7s DEBUG: Starting command: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', '-ac', '--ignore-obsolete'] 0m25.3s DEBUG: Command ok: ['debsums', '--root', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', '-ac', '--ignore-obsolete'] 0m25.3s DEBUG: Starting command: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m25.4s DUMP: 0.15.1 0m25.4s DEBUG: Command ok: ['dpkg-query', '-f', '${Version}\n', '-W', 'adequate'] 0m25.4s INFO: Running adequate version 0.15.1 now. 0m25.4s DEBUG: Starting command: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'pymol'] 0m25.5s DUMP: pymol: py-file-not-bytecompiled /usr/share/chempy/tinker/make99_simple.py pymol: py-file-not-bytecompiled /usr/share/chempy/tinker/make_simple.py pymol: py-file-not-bytecompiled /usr/share/chempy/sidechains/sc_bb_dep.py pymol: py-file-not-bytecompiled /usr/share/chempy/sidechains/sc_bb_ind.py pymol: py-file-not-bytecompiled /usr/share/chempy/sidechains/generate2.py pymol: py-file-not-bytecompiled /usr/share/chempy/sidechains/generate1.py 0m25.5s DEBUG: Command ok: ['adequate', '--root', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'pymol'] 0m25.5s ERROR: WARN: Inadequate results from running adequate! pymol: py-file-not-bytecompiled /usr/share/chempy/tinker/make99_simple.py pymol: py-file-not-bytecompiled /usr/share/chempy/tinker/make_simple.py pymol: py-file-not-bytecompiled /usr/share/chempy/sidechains/sc_bb_dep.py pymol: py-file-not-bytecompiled /usr/share/chempy/sidechains/sc_bb_ind.py pymol: py-file-not-bytecompiled /usr/share/chempy/sidechains/generate2.py pymol: py-file-not-bytecompiled /usr/share/chempy/sidechains/generate1.py 0m25.5s ERROR: WARN: Running adequate resulted in inadequate tags found: py-file-not-bytecompiled 0m25.5s INFO: Running scripts pre_remove 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_remove_40_find_missing_md5sums'] 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m25.5s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_remove_40_find_obsolete_conffiles'] 0m25.5s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m26.0s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_remove_40_find_unowned_lib_links'] 0m26.0s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_remove_50_find_bad_permissions'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_remove_50_find_missing_copyright'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_remove_exceptions'] 0m26.1s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/pre_remove_exceptions'] 0m26.1s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-get', 'remove', 'python-tk', 'libglapi-mesa:amd64', 'libfreetype6:amd64', 'libx11-data', 'libxi6:amd64', 'libgl1-mesa-glx:amd64', 'libx11-6:amd64', 'libglu1-mesa:amd64', 'libxfixes3:amd64', 'libfontconfig1:amd64', 'tk8.5', 'libdrm2:amd64', 'libsqlite3-0:amd64', 'blt', 'libssl1.0.0:amd64', 'libsm6:amd64', 'libglew1.7:amd64', 'libxss1:amd64', 'libxext6:amd64', 'libxcb-glx0:amd64', 'libxxf86vm1:amd64', 'libx11-xcb1:amd64', 'libxdamage1:amd64', 'python', 'libxdmcp6:amd64', 'libexpat1:amd64', 'python2.7', 'libxau6:amd64', 'python2.7-minimal', 'libpng12-0:amd64', 'libxrender1:amd64', 'mime-support', 'x11-common', 'python-minimal', 'ttf-dejavu-core', 'libice6:amd64', 'libxft2:amd64', 'libxt6:amd64', 'libxcb1:amd64', 'libxmu6:amd64', 'libncursesw5:amd64', 'fontconfig-config', 'freeglut3:amd64', 'python-pmw', 'tcl8.5', 'pymol'] 0m26.8s DUMP: Reading package lists... Building dependency tree... Reading state information... The following packages will be REMOVED: blt fontconfig-config freeglut3 libdrm2 libexpat1 libfontconfig1 libfreetype6 libgl1-mesa-glx libglapi-mesa libglew1.7 libglu1-mesa libice6 libncursesw5 libpng12-0 libsm6 libsqlite3-0 libssl1.0.0 libx11-6 libx11-data libx11-xcb1 libxau6 libxcb-glx0 libxcb1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxft2 libxi6 libxmu6 libxrender1 libxss1 libxt6 libxxf86vm1 mime-support pymol python python-minimal python-pmw python-tk python2.7 python2.7-minimal tcl8.5 tk8.5 ttf-dejavu-core x11-common 0 upgraded, 0 newly installed, 46 to remove and 0 not upgraded. After this operation, 65.0 MB disk space will be freed. (Reading database ... 9511 files and directories currently installed.) Removing pymol ... Removing python-pmw ... Removing python-tk ... Removing blt ... Removing tk8.5 ... Removing libxft2:amd64 ... Removing libfontconfig1:amd64 ... Removing fontconfig-config ... Removing freeglut3:amd64 ... Removing libglew1.7:amd64 ... Removing libglu1-mesa:amd64 ... Removing libgl1-mesa-glx:amd64 ... Removing libdrm2:amd64 ... Removing python ... Removing python2.7 ... Removing libexpat1:amd64 ... Removing libfreetype6:amd64 ... Removing libglapi-mesa:amd64 ... Removing libxmu6:amd64 ... Removing libxt6:amd64 ... Removing libsm6:amd64 ... Removing libice6:amd64 ... Removing libncursesw5:amd64 ... Removing libpng12-0:amd64 ... Removing libsqlite3-0:amd64 ... Removing python-minimal ... Removing python2.7-minimal ... Removing libssl1.0.0:amd64 ... Removing libxrender1:amd64 ... Removing libxi6:amd64 ... Removing libxdamage1:amd64 ... Removing libxfixes3:amd64 ... Removing libx11-xcb1:amd64 ... Removing libxxf86vm1:amd64 ... Removing libxss1:amd64 ... Removing libxext6:amd64 ... Removing libx11-6:amd64 ... Removing libx11-data ... Removing libxcb-glx0:amd64 ... Removing libxcb1:amd64 ... Removing libxau6:amd64 ... Removing libxdmcp6:amd64 ... Removing mime-support ... Removing tcl8.5 ... Removing ttf-dejavu-core ... Removing x11-common ... invoke-rc.d: policy-rc.d denied execution of stop. 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-get', 'remove', 'python-tk', 'libglapi-mesa:amd64', 'libfreetype6:amd64', 'libx11-data', 'libxi6:amd64', 'libgl1-mesa-glx:amd64', 'libx11-6:amd64', 'libglu1-mesa:amd64', 'libxfixes3:amd64', 'libfontconfig1:amd64', 'tk8.5', 'libdrm2:amd64', 'libsqlite3-0:amd64', 'blt', 'libssl1.0.0:amd64', 'libsm6:amd64', 'libglew1.7:amd64', 'libxss1:amd64', 'libxext6:amd64', 'libxcb-glx0:amd64', 'libxxf86vm1:amd64', 'libx11-xcb1:amd64', 'libxdamage1:amd64', 'python', 'libxdmcp6:amd64', 'libexpat1:amd64', 'python2.7', 'libxau6:amd64', 'python2.7-minimal', 'libpng12-0:amd64', 'libxrender1:amd64', 'mime-support', 'x11-common', 'python-minimal', 'ttf-dejavu-core', 'libice6:amd64', 'libxft2:amd64', 'libxt6:amd64', 'libxcb1:amd64', 'libxmu6:amd64', 'libncursesw5:amd64', 'fontconfig-config', 'freeglut3:amd64', 'python-pmw', 'tcl8.5', 'pymol'] 0m26.8s INFO: Running scripts post_remove 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_remove_exceptions'] 0m26.8s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_remove_exceptions'] 0m26.8s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'dpkg', '--purge', 'python-tk', 'libglapi-mesa:amd64', 'libfreetype6:amd64', 'libx11-data', 'libxi6:amd64', 'libgl1-mesa-glx:amd64', 'libx11-6:amd64', 'libglu1-mesa:amd64', 'libxfixes3:amd64', 'libfontconfig1:amd64', 'tk8.5', 'libdrm2:amd64', 'libsqlite3-0:amd64', 'blt', 'libssl1.0.0:amd64', 'libsm6:amd64', 'libglew1.7:amd64', 'libxss1:amd64', 'libxext6:amd64', 'libxcb-glx0:amd64', 'libxxf86vm1:amd64', 'libx11-xcb1:amd64', 'libxdamage1:amd64', 'python', 'libxdmcp6:amd64', 'libexpat1:amd64', 'python2.7', 'libxau6:amd64', 'python2.7-minimal', 'libpng12-0:amd64', 'libxrender1:amd64', 'mime-support', 'x11-common', 'python-minimal', 'ttf-dejavu-core', 'libice6:amd64', 'libxft2:amd64', 'libxt6:amd64', 'libxcb1:amd64', 'libxmu6:amd64', 'libncursesw5:amd64', 'fontconfig-config', 'freeglut3:amd64', 'python-pmw', 'tcl8.5'] 0m27.2s DUMP: dpkg: warning: ignoring request to remove python-tk which isn't installed (Reading database ... 6838 files and directories currently installed.) Removing libglapi-mesa:amd64 ... Purging configuration files for libglapi-mesa:amd64 ... Removing libfreetype6:amd64 ... Purging configuration files for libfreetype6:amd64 ... dpkg: warning: ignoring request to remove libx11-data which isn't installed Removing libxi6:amd64 ... Purging configuration files for libxi6:amd64 ... Removing libgl1-mesa-glx:amd64 ... Purging configuration files for libgl1-mesa-glx:amd64 ... Removing libx11-6:amd64 ... Purging configuration files for libx11-6:amd64 ... Removing libglu1-mesa:amd64 ... Purging configuration files for libglu1-mesa:amd64 ... Removing libxfixes3:amd64 ... Purging configuration files for libxfixes3:amd64 ... Removing libfontconfig1:amd64 ... Purging configuration files for libfontconfig1:amd64 ... Removing tk8.5 ... Purging configuration files for tk8.5 ... Removing libdrm2:amd64 ... Purging configuration files for libdrm2:amd64 ... Removing libsqlite3-0:amd64 ... Purging configuration files for libsqlite3-0:amd64 ... Removing blt ... Purging configuration files for blt ... Removing libssl1.0.0:amd64 ... Purging configuration files for libssl1.0.0:amd64 ... Removing libsm6:amd64 ... Purging configuration files for libsm6:amd64 ... Removing libglew1.7:amd64 ... Purging configuration files for libglew1.7:amd64 ... Removing libxss1:amd64 ... Purging configuration files for libxss1:amd64 ... Removing libxext6:amd64 ... Purging configuration files for libxext6:amd64 ... Removing libxcb-glx0:amd64 ... Purging configuration files for libxcb-glx0:amd64 ... Removing libxxf86vm1:amd64 ... Purging configuration files for libxxf86vm1:amd64 ... Removing libx11-xcb1:amd64 ... Purging configuration files for libx11-xcb1:amd64 ... Removing libxdamage1:amd64 ... Purging configuration files for libxdamage1:amd64 ... Removing python ... Purging configuration files for python ... Removing libxdmcp6:amd64 ... Purging configuration files for libxdmcp6:amd64 ... Removing libexpat1:amd64 ... Purging configuration files for libexpat1:amd64 ... Removing python2.7 ... Purging configuration files for python2.7 ... Removing libxau6:amd64 ... Purging configuration files for libxau6:amd64 ... Removing python2.7-minimal ... Purging configuration files for python2.7-minimal ... Removing libpng12-0:amd64 ... Purging configuration files for libpng12-0:amd64 ... Removing libxrender1:amd64 ... Purging configuration files for libxrender1:amd64 ... Removing mime-support ... Purging configuration files for mime-support ... Removing x11-common ... Purging configuration files for x11-common ... dpkg: warning: ignoring request to remove python-minimal which isn't installed dpkg: warning: ignoring request to remove ttf-dejavu-core which isn't installed Removing libice6:amd64 ... Purging configuration files for libice6:amd64 ... Removing libxft2:amd64 ... Purging configuration files for libxft2:amd64 ... Removing libxt6:amd64 ... Purging configuration files for libxt6:amd64 ... Removing libxcb1:amd64 ... Purging configuration files for libxcb1:amd64 ... Removing libxmu6:amd64 ... Purging configuration files for libxmu6:amd64 ... Removing libncursesw5:amd64 ... Purging configuration files for libncursesw5:amd64 ... Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing freeglut3:amd64 ... Purging configuration files for freeglut3:amd64 ... dpkg: warning: ignoring request to remove python-pmw which isn't installed Removing tcl8.5 ... Purging configuration files for tcl8.5 ... 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'dpkg', '--purge', 'python-tk', 'libglapi-mesa:amd64', 'libfreetype6:amd64', 'libx11-data', 'libxi6:amd64', 'libgl1-mesa-glx:amd64', 'libx11-6:amd64', 'libglu1-mesa:amd64', 'libxfixes3:amd64', 'libfontconfig1:amd64', 'tk8.5', 'libdrm2:amd64', 'libsqlite3-0:amd64', 'blt', 'libssl1.0.0:amd64', 'libsm6:amd64', 'libglew1.7:amd64', 'libxss1:amd64', 'libxext6:amd64', 'libxcb-glx0:amd64', 'libxxf86vm1:amd64', 'libx11-xcb1:amd64', 'libxdamage1:amd64', 'python', 'libxdmcp6:amd64', 'libexpat1:amd64', 'python2.7', 'libxau6:amd64', 'python2.7-minimal', 'libpng12-0:amd64', 'libxrender1:amd64', 'mime-support', 'x11-common', 'python-minimal', 'ttf-dejavu-core', 'libice6:amd64', 'libxft2:amd64', 'libxt6:amd64', 'libxcb1:amd64', 'libxmu6:amd64', 'libncursesw5:amd64', 'fontconfig-config', 'freeglut3:amd64', 'python-pmw', 'tcl8.5'] 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'dpkg', '--purge', 'pymol'] 0m27.2s DUMP: (Reading database ... 6780 files and directories currently installed.) Removing pymol ... Purging configuration files for pymol ... 0m27.2s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'dpkg', '--purge', 'pymol'] 0m27.2s INFO: Running scripts post_purge 0m27.2s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_purge_exceptions'] 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_purge_exceptions'] 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'dpkg', '--purge', '--pending'] 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'dpkg', '--purge', '--pending'] 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'dpkg', '--remove', '--pending'] 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'dpkg', '--remove', '--pending'] 0m27.3s INFO: Running scripts post_test 0m27.3s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_test_exceptions'] 0m27.3s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'tmp/scripts/post_test_exceptions'] 0m27.3s DEBUG: Starting command: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ'] 0m27.7s DEBUG: Command failed (status=1), but ignoring error: ['lsof', '-w', '+D', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ'] 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'dpkg-divert', '--list'] 0m27.7s DUMP: diversion of /usr/share/man/man1/sh.1.gz to /usr/share/man/man1/sh.distrib.1.gz by dash local diversion of /bin/sync to /bin/sync.distrib local diversion of /home to /home.distrib diversion of /bin/sh to /bin/sh.distrib by dash 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'dpkg-divert', '--list'] 0m27.7s DEBUG: Starting command: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-get', 'clean'] 0m27.7s DEBUG: Command ok: ['chroot', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ', 'apt-get', 'clean'] 0m27.7s DEBUG: Recording chroot state 0m28.6s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/run/shm'] 0m28.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/run/shm'] 0m28.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/dev/console'] 0m28.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/dev/console'] 0m28.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/dev/ptmx'] 0m28.7s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/dev/ptmx'] 0m28.7s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/dev/pts'] 0m28.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/dev/pts'] 0m28.8s DEBUG: Starting command: ['umount', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/proc'] 0m28.8s DEBUG: Command ok: ['umount', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ/proc'] 0m28.8s DEBUG: Starting command: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ'] 0m28.8s DEBUG: Command ok: ['rm', '-rf', '--one-file-system', '/srv/piuparts.debian.org/tmp/tmpuIpqNJ'] 0m28.8s DEBUG: Removed directory tree at /srv/piuparts.debian.org/tmp/tmpuIpqNJ 0m28.8s INFO: PASS: Upgrading between Debian distributions. 0m28.8s INFO: PASS: All tests. 0m28.8s INFO: piuparts run ends. ret=0 End: 2018-03-10 03:45:22 UTC